DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LTPCTS
Uniprot ID:
Q8IUM7
Source protein:
Neuronal PAS domain-containing protein 4
Source gene:
NPAS4
Class:
DEG_SCF_FBW7_1
Location:
501:506
E3 ligase:
FBXW7
DEGRON score:
0.9837
ASA_SCORE:
57.5333
COIL:
0.9027
CONS_SCORE:
0.3268
DSS_SCORE:
0.5539
HELIX:
0.0495
FCONS_SCORE:
1.1078
RIG_SCORE:
0.7385
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q500R
TCGA-49-AARN
LUAD
TCGA
LTPCTS
DEG_SCF_FBW7_1
0.3056
p.Q500R
DO218923
LUAD
ICGC
LTPCTS
DEG_SCF_FBW7_1
0.3056
p.T505I
TCGA-50-5931
LUAD
TCGA
LTPCTS
DEG_SCF_FBW7_1
0.5966
p.T505I
DO24980
LUAD
ICGC
LTPCTS
DEG_SCF_FBW7_1
0.5966
p.E498V
TCGA-77-7337
LUSC
TCGA
LTPCTS
DEG_SCF_FBW7_1
0.25
p.E498V
DO27445
LUSC
ICGC
LTPCTS
DEG_SCF_FBW7_1
0.25
p.T516I
TCGA-A5-A0G2
UCEC
TCGA
LTPCTS
DEG_SCF_FBW7_1
0.0556
p.T516I
DO41235
UCEC
ICGC
LTPCTS
DEG_SCF_FBW7_1
0.0556
p.E498Q
TCGA-E2-A1LG
BRCA
TCGA
LTPCTS
DEG_SCF_FBW7_1
0.25
p.E498Q
DO4018
BRCA
ICGC
LTPCTS
DEG_SCF_FBW7_1
0.25
p.P503S
TCGA-EE-A2MR
SKCM
TCGA
LTPCTS
DEG_SCF_FBW7_1
0.6752
p.P503S
DO37819
SKCM
ICGC
LTPCTS
DEG_SCF_FBW7_1
0.6752
p.P503L
TCGA-EE-A2MR
SKCM
TCGA
LTPCTS
DEG_SCF_FBW7_1
0.7582
p.P503L
DO37819
SKCM
ICGC
LTPCTS
DEG_SCF_FBW7_1
0.7582
p.D499H
DO1094
BRCA
ICGC
LTPCTS
DEG_SCF_FBW7_1
0.2778
p.P509S
SIDM00545
Melanoma
GDSC
LTPCTS
DEG_SCF_FBW7_1
0.25
p.P509S
ACH-000987
Skin Cancer
CCLE
LTPCTS
DEG_SCF_FBW7_1
0.25
p.P509S
Mewo
skin
COSMIC
LTPCTS
DEG_SCF_FBW7_1
0.25
p.S493L
SIDM01106
Melanoma
GDSC
LTPCTS
DEG_SCF_FBW7_1
0.1111
p.S493L
ACH-000822
Skin Cancer
CCLE
LTPCTS
DEG_SCF_FBW7_1
0.1111
p.S493L
SK-MEL-24
skin
COSMIC
LTPCTS
DEG_SCF_FBW7_1
0.1111
Drug responses associated with NPAS4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LTPCTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8IUM7
Neuronal PAS domain-containing protein 4
DEG_SCF_FBW7_1
501:506
LTPCTS
FBXW7
0.9837
More...