DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LTPDAE
Uniprot ID:
Q6ZWH5
Source protein:
Serine/threonine-protein kinase Nek10
Source gene:
NEK10
Class:
DEG_SCF_FBW7_2
Location:
766:771
E3 ligase:
FBXW7
DEGRON score:
0.7188
ASA_SCORE:
63.5
COIL:
0.7685
CONS_SCORE:
0.4837
DSS_SCORE:
0.3648
HELIX:
0.209
FCONS_SCORE:
1.0877
RIG_SCORE:
0.7935
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P768A
TCGA-51-6867
LUSC
TCGA
LTPDAE
DEG_SCF_FBW7_2
0.7503
p.E771K
TCGA-EB-A3XD
SKCM
TCGA
LTPDAE
DEG_SCF_FBW7_2
0.7022
p.D769V
ACH-000070
Leukemia
CCLE
LTPDAE
DEG_SCF_FBW7_2
0.6674
p.D769V
697
haematopoietic_and_lymphoid_tissue
COSMIC
LTPDAE
DEG_SCF_FBW7_2
0.6674
p.L766P
ACH-000990
Endometrial/Uterine Cancer
CCLE
LTPDAE
DEG_SCF_FBW7_2
0.6471
p.R773C
ACH-002388
Skin Cancer
CCLE
LTPDAE
DEG_SCF_FBW7_2
0.2778
p.S781L
TCGA-19-5956
GBM
TCGA
LTPDAE
DEG_SCF_FBW7_2
0.0556
p.S781L
TCGA-AJ-A3EL
UCEC
TCGA
LTPDAE
DEG_SCF_FBW7_2
0.0556
p.S781L
TCGA-AX-A06F
UCEC
TCGA
LTPDAE
DEG_SCF_FBW7_2
0.0556
p.S781L
TCGA-D1-A16X
UCEC
TCGA
LTPDAE
DEG_SCF_FBW7_2
0.0556
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Drug responses associated with NEK10 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of LTPDAE
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q6ZWH5
Serine/threonine-protein kinase Nek10
DEG_SCF_FBW7_2
766:771
LTPDAE
FBXW7
0.7188
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