DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LTPPAT
Uniprot ID:
Q5VV67
Source protein:
Peroxisome proliferator-activated receptor gamma coactivator-related protein 1
Source gene:
PPRC1
Class:
DEG_SCF_FBW7_1
Location:
1228:1233
E3 ligase:
FBXW7
DEGRON score:
0.9986
ASA_SCORE:
84.8333
COIL:
0.9612
CONS_SCORE:
0.6649
DSS_SCORE:
0.5125
HELIX:
0.0137
FCONS_SCORE:
1.234
RIG_SCORE:
0.6314
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A1219V
TCGA-AX-A1CE
UCEC
TCGA
LTPPAT
DEG_SCF_FBW7_1
0.0833
p.A1219V
DO42280
UCEC
ICGC
LTPPAT
DEG_SCF_FBW7_1
0.0833
p.S1233P
DO231140
LAML
ICGC
LTPPAT
DEG_SCF_FBW7_1
0.6752
p.A1219T
DO45155
LIRI
ICGC
LTPPAT
DEG_SCF_FBW7_1
0.0833
p.S1235F
DO23782
LUAD
ICGC
LTPPAT
DEG_SCF_FBW7_1
0.2778
p.S1226L
DO51407
PRAD
ICGC
LTPPAT
DEG_SCF_FBW7_1
0.2778
p.S1226L
DO50076
UCEC
ICGC
LTPPAT
DEG_SCF_FBW7_1
0.2778
p.S1223F
DO229459
SKCA
ICGC
LTPPAT
DEG_SCF_FBW7_1
0.1944
p.H1236Y
DO229213
THCA
ICGC
LTPPAT
DEG_SCF_FBW7_1
0.25
p.R1238H
DO41644
UCEC
ICGC
LTPPAT
DEG_SCF_FBW7_1
0.1944
p.S1220L
DO43891
UCEC
ICGC
LTPPAT
DEG_SCF_FBW7_1
0.1111
p.S1220L
DO42793
UCEC
ICGC
LTPPAT
DEG_SCF_FBW7_1
0.1111
p.S1220L
SNU-1040
large_intestine
COSMIC
LTPPAT
DEG_SCF_FBW7_1
0.1111
p.L1228I
SIDM00984
Other Blood Cancers
GDSC
LTPPAT
DEG_SCF_FBW7_1
0.6063
p.L1228I
SIDM00652
Small Cell Lung Carcinoma
GDSC
LTPPAT
DEG_SCF_FBW7_1
0.6063
p.L1228I
SIDM01780
B-Cell Non-Hodgkin's Lymphoma
GDSC
LTPPAT
DEG_SCF_FBW7_1
0.6063
p.L1228I
SIDM01766
Chondrosarcoma
GDSC
LTPPAT
DEG_SCF_FBW7_1
0.6063
p.G1227E
SIDM00032
Bladder Carcinoma
GDSC
LTPPAT
DEG_SCF_FBW7_1
0.3056
p.G1227E
SCaBER
urinary_tract
COSMIC
LTPPAT
DEG_SCF_FBW7_1
0.3056
p.A1243G
SIDM01029
Esophageal Squamous Cell Carcinoma
GDSC
LTPPAT
DEG_SCF_FBW7_1
0.0556
p.A1243G
ACH-000873
Esophageal Cancer
CCLE
LTPPAT
DEG_SCF_FBW7_1
0.0556
p.A1243G
KYSE-270
oesophagus
COSMIC
LTPPAT
DEG_SCF_FBW7_1
0.0556
p.L1222P
SIDM00500
Colorectal Carcinoma
GDSC
LTPPAT
DEG_SCF_FBW7_1
0.1667
p.L1222P
ACH-000959
Colon/Colorectal Cancer
CCLE
LTPPAT
DEG_SCF_FBW7_1
0.1667
p.P1242S
EGI-1
biliary_tract
COSMIC
LTPPAT
DEG_SCF_FBW7_1
0.0833
Drug responses associated with PPRC1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LTPPAT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q5VV67
Peroxisome proliferator-activated receptor gamma coactivator-related protein 1
DEG_SCF_FBW7_1
1228:1233
LTPPAT
FBXW7
0.9986
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