DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LTPYLS
Uniprot ID:
P56524
Source protein:
Histone deacetylase 4
Source gene:
HDAC4
Class:
DEG_SCF_FBW7_1
Location:
393:398
E3 ligase:
FBXW7
DEGRON score:
0.9959
ASA_SCORE:
60.4667
COIL:
0.7243
CONS_SCORE:
0.3454
DSS_SCORE:
0.4779
HELIX:
0.0222
FCONS_SCORE:
1.1001
RIG_SCORE:
0.7218
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q383P
TCGA-24-1422
OV
TCGA
LTPYLS
DEG_SCF_FBW7_1
0.0556
p.R404L
TCGA-90-7964
LUSC
TCGA
LTPYLS
DEG_SCF_FBW7_1
0.1667
p.R404L
TCGA-DZ-6132
KIRP
TCGA
LTPYLS
DEG_SCF_FBW7_1
0.1667
p.R404W
TCGA-A5-A1OH
UCEC
TCGA
LTPYLS
DEG_SCF_FBW7_1
0.1667
p.G390S
TCGA-AC-A8OP
BRCA
TCGA
LTPYLS
DEG_SCF_FBW7_1
0.25
p.G390S
SIDM00619
Thyroid Gland Carcinoma
GDSC
LTPYLS
DEG_SCF_FBW7_1
0.25
p.G390S
SIDM00612
Glioma
GDSC
LTPYLS
DEG_SCF_FBW7_1
0.25
p.L385F
TCGA-DD-A4NF
LIHC
TCGA
LTPYLS
DEG_SCF_FBW7_1
0.1111
p.G407V
TCGA-EE-A2MG
SKCM
TCGA
LTPYLS
DEG_SCF_FBW7_1
0.0833
p.A388V
DO8898
COAD
ICGC
LTPYLS
DEG_SCF_FBW7_1
0.1944
p.L408I
DO229018
LICA
ICGC
LTPYLS
DEG_SCF_FBW7_1
0.0556
p.Q395K
DO229032
LICA
ICGC
LTPYLS
DEG_SCF_FBW7_1
0.6944
p.E390D
DO229051
LICA
ICGC
LTPYLS
DEG_SCF_FBW7_1
0.25
p.G385V
DO24900
LUAD
ICGC
LTPYLS
DEG_SCF_FBW7_1
0.1111
p.G385V
DO37651
SKCM
ICGC
LTPYLS
DEG_SCF_FBW7_1
0.1111
p.L408V
DO45476
LUSC
ICGC
LTPYLS
DEG_SCF_FBW7_1
0.0556
p.P393L
DO37619
SKCM
ICGC
LTPYLS
DEG_SCF_FBW7_1
0.7582
p.P392S
DO229257
THCA
ICGC
LTPYLS
DEG_SCF_FBW7_1
0.3056
p.Q391K
DO229227
THCA
ICGC
LTPYLS
DEG_SCF_FBW7_1
0.7222
p.P393S
DO223286
UCEC
ICGC
LTPYLS
DEG_SCF_FBW7_1
0.6752
p.S401Y
DO41644
UCEC
ICGC
LTPYLS
DEG_SCF_FBW7_1
0.25
p.L404I
DO41488
UCEC
ICGC
LTPYLS
DEG_SCF_FBW7_1
0.1667
p.S400L
SIDM01055
Glioblastoma
GDSC
LTPYLS
DEG_SCF_FBW7_1
0.7222
p.S400L
GAMG
central_nervous_system
COSMIC
LTPYLS
DEG_SCF_FBW7_1
0.7222
p.S400R
EFM-19
breast
COSMIC
LTPYLS
DEG_SCF_FBW7_1
0.7222
p.A403V
UM-UC-3
urinary_tract
COSMIC
LTPYLS
DEG_SCF_FBW7_1
0.1944
Drug responses associated with HDAC4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LTPYLS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P56524
Histone deacetylase 4
DEG_SCF_FBW7_1
393:398
LTPYLS
FBXW7
0.9959
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