DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LVIYID
Uniprot ID:
O95299
Source protein:
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial
Source gene:
NDUFA10
Class:
LIG_APCC_ABBA_1
Location:
203:208
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5946
ASA_SCORE:
9.9833
COIL:
0.1455
CONS_SCORE:
0.7381
DSS_SCORE:
0.0982
HELIX:
0.0018
FCONS_SCORE:
1.4902
RIG_SCORE:
0.9282
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D208Y
TCGA-86-7711
LUAD
TCGA
LVIYID
LIG_APCC_ABBA_1
0.7325
p.D208Y
DO25717
LUAD
ICGC
LVIYID
LIG_APCC_ABBA_1
0.7325
p.R217Q
TCGA-A5-A0G2
UCEC
TCGA
LVIYID
LIG_APCC_ABBA_1
0.0833
p.R217Q
TCGA-DF-A2KU
UCEC
TCGA
LVIYID
LIG_APCC_ABBA_1
0.0833
p.R217Q
DO223286
UCEC
ICGC
LVIYID
LIG_APCC_ABBA_1
0.0833
p.R217Q
DO41235
UCEC
ICGC
LVIYID
LIG_APCC_ABBA_1
0.0833
p.L203P
TCGA-AP-A059
UCEC
TCGA
LVIYID
LIG_APCC_ABBA_1
0.7582
p.L203P
DO41361
UCEC
ICGC
LVIYID
LIG_APCC_ABBA_1
0.7582
p.V210L
DO8730
COAD
ICGC
LVIYID
LIG_APCC_ABBA_1
0.2778
p.P201T
DO222765
COCA
ICGC
LVIYID
LIG_APCC_ABBA_1
0.2778
p.A196E
DO229028
LICA
ICGC
LVIYID
LIG_APCC_ABBA_1
0.1389
p.S206R
DO229026
LICA
ICGC
LVIYID
LIG_APCC_ABBA_1
0.7427
p.D197Y
DO50846
LICA
ICGC
LVIYID
LIG_APCC_ABBA_1
0.1667
p.G200V
DO52205
LIHC
ICGC
LVIYID
LIG_APCC_ABBA_1
0.25
p.S199N
DO231559
LINC
ICGC
LVIYID
LIG_APCC_ABBA_1
0.2222
p.T197N
DO49200
PACA
ICGC
LVIYID
LIG_APCC_ABBA_1
0.1667
p.L203V
DO34544
PACA
ICGC
LVIYID
LIG_APCC_ABBA_1
0.5654
p.L201M
DO35242
PACA
ICGC
LVIYID
LIG_APCC_ABBA_1
0.2778
p.T197I
DO41235
UCEC
ICGC
LVIYID
LIG_APCC_ABBA_1
0.1667
p.V211I
SIDM00260
Gastric Carcinoma
GDSC
LVIYID
LIG_APCC_ABBA_1
0.25
p.V211I
SIDM00469
Pancreatic Carcinoma
GDSC
LVIYID
LIG_APCC_ABBA_1
0.25
p.V211I
SIDM01033
Bladder Carcinoma
GDSC
LVIYID
LIG_APCC_ABBA_1
0.25
p.V211I
SIDM00248
Gastric Carcinoma
GDSC
LVIYID
LIG_APCC_ABBA_1
0.25
p.V211I
KU-19-19
urinary_tract
COSMIC
LVIYID
LIG_APCC_ABBA_1
0.25
p.V211I
MKN28
stomach
COSMIC
LVIYID
LIG_APCC_ABBA_1
0.25
p.V211I
PSN1
pancreas
COSMIC
LVIYID
LIG_APCC_ABBA_1
0.25
p.Y206H
SIDM01032
Esophageal Squamous Cell Carcinoma
GDSC
LVIYID
LIG_APCC_ABBA_1
0.6118
p.C196W
SIDM00044
Head and Neck Carcinoma
GDSC
LVIYID
LIG_APCC_ABBA_1
0.1389
p.C196W
PCI-30
upper_aerodigestive_tract
COSMIC
LVIYID
LIG_APCC_ABBA_1
0.1389
Drug responses associated with NDUFA10 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LVIYID
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95299
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial
LIG_APCC_ABBA_1
203:208
LVIYID
APC,CDC20,FZR1
0.5946
More...