DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LVLHRD
Uniprot ID:
Q9UPQ7
Source protein:
E3 ubiquitin-protein ligase PDZRN3
Source gene:
PDZRN3
Class:
LIG_APCC_ABBA_1
Location:
250:255
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6997
ASA_SCORE:
51.1
COIL:
0.3397
CONS_SCORE:
0.3084
DSS_SCORE:
0.3465
HELIX:
0.0247
FCONS_SCORE:
0.9977
RIG_SCORE:
0.819
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G242V
TCGA-44-7667
LUAD
TCGA
LVLHRD
LIG_APCC_ABBA_1
0.1111
p.G242V
DO23830
LUAD
ICGC
LVLHRD
LIG_APCC_ABBA_1
0.1111
p.K246N
TCGA-AP-A0LM
UCEC
TCGA
LVLHRD
LIG_APCC_ABBA_1
0.3333
p.K246N
DO43306
UCEC
ICGC
LVLHRD
LIG_APCC_ABBA_1
0.3333
p.R254P
TCGA-BG-A220
UCEC
TCGA
LVLHRD
LIG_APCC_ABBA_1
0.6401
p.R254P
DO41784
UCEC
ICGC
LVLHRD
LIG_APCC_ABBA_1
0.6401
p.E243K
TCGA-C5-A8YR
CESC
TCGA
LVLHRD
LIG_APCC_ABBA_1
0.1389
p.E243K
DO49908
CESC
ICGC
LVLHRD
LIG_APCC_ABBA_1
0.1389
p.E243K
SIDM00443
B-Cell Non-Hodgkin's Lymphoma
GDSC
LVLHRD
LIG_APCC_ABBA_1
0.1389
p.G260E
TCGA-EY-A1GI
UCEC
TCGA
LVLHRD
LIG_APCC_ABBA_1
0.1944
p.G260E
DO41211
UCEC
ICGC
LVLHRD
LIG_APCC_ABBA_1
0.1944
p.S258F
TCGA-UD-AABZ
MESO
TCGA
LVLHRD
LIG_APCC_ABBA_1
0.25
p.D248N
DO3322
BRCA
ICGC
LVLHRD
LIG_APCC_ABBA_1
0.2778
p.A250V
DO228070
EOPC
ICGC
LVLHRD
LIG_APCC_ABBA_1
0.6936
p.D249N
DO233798
GACA
ICGC
LVLHRD
LIG_APCC_ABBA_1
0.75
p.D249N
DO36881
READ
ICGC
LVLHRD
LIG_APCC_ABBA_1
0.75
p.Q243K
DO229009
LICA
ICGC
LVLHRD
LIG_APCC_ABBA_1
0.1389
p.S253F
DO47272
SKCM
ICGC
LVLHRD
LIG_APCC_ABBA_1
0.7982
p.R254W
SIDM00945
Colorectal Carcinoma
GDSC
LVLHRD
LIG_APCC_ABBA_1
0.7523
p.R254W
CL-34
large_intestine
COSMIC
LVLHRD
LIG_APCC_ABBA_1
0.7523
p.V259M
ACH-000936
Ovarian Cancer
CCLE
LVLHRD
LIG_APCC_ABBA_1
0.2222
p.V259M
EFO-27
ovary
COSMIC
LVLHRD
LIG_APCC_ABBA_1
0.2222
Drug responses associated with PDZRN3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LVLHRD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9UPQ7
E3 ubiquitin-protein ligase PDZRN3
LIG_APCC_ABBA_1
250:255
LVLHRD
APC,CDC20,FZR1
0.6997
More...