DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
LVPFRD
Uniprot ID:
O95235
Source protein:
Kinesin-like protein KIF20A
Source gene:
KIF20A
Class:
LIG_APCC_ABBA_1
Location:
456:461
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9122
ASA_SCORE:
55.3667
COIL:
0.8128
CONS_SCORE:
0.75
DSS_SCORE:
0.3957
HELIX:
0.1075
FCONS_SCORE:
1.1227
RIG_SCORE:
0.8252
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R460P
TCGA-06-1801
GBM
TCGA
LVPFRD
LIG_APCC_ABBA_1
0.6401
p.R460P
DO11986
GBM
ICGC
LVPFRD
LIG_APCC_ABBA_1
0.6401
p.R460H
TCGA-A5-A0G2
UCEC
TCGA
LVPFRD
LIG_APCC_ABBA_1
0.7133
p.R460H
DO229061
LICA
ICGC
LVPFRD
LIG_APCC_ABBA_1
0.7133
p.R460H
DO41235
UCEC
ICGC
LVPFRD
LIG_APCC_ABBA_1
0.7133
p.R460H
SIDM00214
Colorectal Carcinoma
GDSC
LVPFRD
LIG_APCC_ABBA_1
0.7133
p.R460H
ACH-000955
Colon/Colorectal Cancer
CCLE
LVPFRD
LIG_APCC_ABBA_1
0.7133
p.R460H
SNU-407
large_intestine
COSMIC
LVPFRD
LIG_APCC_ABBA_1
0.7133
p.P458S
TCGA-EE-A2MR
SKCM
TCGA
LVPFRD
LIG_APCC_ABBA_1
0.6752
p.P458S
DO37819
SKCM
ICGC
LVPFRD
LIG_APCC_ABBA_1
0.6752
p.R451W
TCGA-VQ-AA6G
STAD
TCGA
LVPFRD
LIG_APCC_ABBA_1
0.1944
p.R451W
DO51801
STAD
ICGC
LVPFRD
LIG_APCC_ABBA_1
0.1944
p.R466Q
DO234375
ESAD
ICGC
LVPFRD
LIG_APCC_ABBA_1
0.1944
p.N465H
DO233867
GACA
ICGC
LVPFRD
LIG_APCC_ABBA_1
0.2222
p.S462I
DO229035
LICA
ICGC
LVPFRD
LIG_APCC_ABBA_1
0.3056
p.F471V
SIDM00422
Hodgkin's Lymphoma
GDSC
LVPFRD
LIG_APCC_ABBA_1
0.0556
p.F471V
ACH-001203
Lymphoma
CCLE
LVPFRD
LIG_APCC_ABBA_1
0.0556
p.F471V
SUP-HD1
haematopoietic_and_lymphoid_tissue
COSMIC
LVPFRD
LIG_APCC_ABBA_1
0.0556
p.R460C
SIDM00429
B-Lymphoblastic Leukemia
GDSC
LVPFRD
LIG_APCC_ABBA_1
0.719
p.R460C
ACH-000938
Leukemia
CCLE
LVPFRD
LIG_APCC_ABBA_1
0.719
p.R460C
NALM-6
haematopoietic_and_lymphoid_tissue
COSMIC
LVPFRD
LIG_APCC_ABBA_1
0.719
p.Q446R
SIDM00576
Acute Myeloid Leukemia
GDSC
LVPFRD
LIG_APCC_ABBA_1
0.0556
p.Q446R
ACH-002290
Leukemia
CCLE
LVPFRD
LIG_APCC_ABBA_1
0.0556
p.Q446R
NKM-1
haematopoietic_and_lymphoid_tissue
COSMIC
LVPFRD
LIG_APCC_ABBA_1
0.0556
p.P468L
BC-3
haematopoietic_and_lymphoid_tissue
COSMIC
LVPFRD
LIG_APCC_ABBA_1
0.1389
p.S460P
LB373-MEL-D
skin
COSMIC
LVPFRD
LIG_APCC_ABBA_1
0.6752
p.G458D
D-502MG
central_nervous_system
COSMIC
LVPFRD
LIG_APCC_ABBA_1
0.7198
p.F453V
SUP-HD1
haematopoietic_and_lymphoid_tissue
COSMIC
LVPFRD
LIG_APCC_ABBA_1
0.6944
Drug responses associated with KIF20A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LVPFRD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95235
Kinesin-like protein KIF20A
LIG_APCC_ABBA_1
456:461
LVPFRD
APC,CDC20,FZR1
0.9122
More...