DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
MRPDLSKMM
Uniprot ID:
Q9HCK8
Source protein:
Chromodomain-helicase-DNA-binding protein 8
Source gene:
CHD8
Class:
DEG_APCC_DBOX_1
Location:
2422:2430
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6839
ASA_SCORE:
86.8444
COIL:
0.5104
CONS_SCORE:
0.3139
DSS_SCORE:
0.6352
HELIX:
0.4788
FCONS_SCORE:
0.9267
RIG_SCORE:
0.7461
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R2420C
TCGA-FI-A2D0
UCEC
TCGA
MRPDLSKMM
DEG_APCC_DBOX_1
0.2778
p.M2433V
SIDM00661
B-Cell Non-Hodgkin's Lymphoma
GDSC
MRPDLSKMM
DEG_APCC_DBOX_1
0.25
p.M2433V
ACH-000914
Lymphoma
CCLE
MRPDLSKMM
DEG_APCC_DBOX_1
0.25
p.M2433V
HT
haematopoietic_and_lymphoid_tissue
COSMIC
MRPDLSKMM
DEG_APCC_DBOX_1
0.25
p.Q2434R
SIDM00151
Ovarian Carcinoma
GDSC
MRPDLSKMM
DEG_APCC_DBOX_1
0.2222
p.Q2434R
ACH-000966
Ovarian Cancer
CCLE
MRPDLSKMM
DEG_APCC_DBOX_1
0.2222
p.Q2434R
IGROV-1
ovary
COSMIC
MRPDLSKMM
DEG_APCC_DBOX_1
0.2222
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Drug responses associated with CHD8 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of MRPDLSKMM
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9HCK8
Chromodomain-helicase-DNA-binding protein 8
DEG_APCC_DBOX_1
2422:2430
MRPDLSKMM
APC,CDC20,FZR1
0.6839
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