DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
NPPAGVDPI
Uniprot ID:
Q7Z3B4
Source protein:
Nucleoporin p54
Source gene:
NUP54
Class:
DEG_SIAH_1
Location:
299:307
E3 ligase:
SIAH1,SIAH2,SIAH3
DEGRON score:
0.9773
ASA_SCORE:
63.8333
COIL:
0.7493
CONS_SCORE:
0.4543
DSS_SCORE:
0.3731
HELIX:
0.2342
FCONS_SCORE:
1.0071
RIG_SCORE:
0.7242
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.W309C
TCGA-55-6979
LUAD
TCGA
NPPAGVDPI
DEG_SIAH_1
0.2778
p.W309C
DO24110
LUAD
ICGC
NPPAGVDPI
DEG_SIAH_1
0.2778
p.S289Y
TCGA-A5-A0G2
UCEC
TCGA
NPPAGVDPI
DEG_SIAH_1
0.5
p.S289Y
DO41235
UCEC
ICGC
NPPAGVDPI
DEG_SIAH_1
0.5
p.P290T
TCGA-CN-5360
HNSC
TCGA
NPPAGVDPI
DEG_SIAH_1
0.0833
p.P290T
DO14662
HNSC
ICGC
NPPAGVDPI
DEG_SIAH_1
0.0833
p.Q311K
DO229037
LICA
ICGC
NPPAGVDPI
DEG_SIAH_1
0.2222
p.Q311R
DO229264
THCA
ICGC
NPPAGVDPI
DEG_SIAH_1
0.2222
p.K313Q
SIDM01546
Kidney Carcinoma
GDSC
NPPAGVDPI
DEG_SIAH_1
0.6111
Drug responses associated with NUP54 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of NPPAGVDPI
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q7Z3B4
Nucleoporin p54
DEG_SIAH_1
299:307
NPPAGVDPI
SIAH1,SIAH2,SIAH3
0.9773
More...