DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
NPYTALP
Uniprot ID:
Q8TE12
Source protein:
LIM homeobox transcription factor 1-alpha
Source gene:
LMX1A
Class:
CBL_PTK
Location:
288:294
E3 ligase:
CBL
DEGRON score:
0.971
ASA_SCORE:
77.5143
COIL:
0.9021
CONS_SCORE:
0.4211
DSS_SCORE:
0.5237
HELIX:
0.0387
FCONS_SCORE:
1.0077
RIG_SCORE:
0.7608
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q297L
TCGA-44-5644
LUAD
TCGA
NPYTALP
CBL_PTK
0.25
p.Q297L
DO25153
LUAD
ICGC
NPYTALP
CBL_PTK
0.25
p.Y290F
TCGA-44-5644
LUAD
TCGA
NPYTALP
CBL_PTK
0.7528
p.Y290F
DO25153
LUAD
ICGC
NPYTALP
CBL_PTK
0.7528
p.A292S
TCGA-95-7562
LUAD
TCGA
NPYTALP
CBL_PTK
0.6477
p.A292S
DO51196
LUAD
ICGC
NPYTALP
CBL_PTK
0.6477
p.N288D
TCGA-AA-3667
COAD
TCGA
NPYTALP
CBL_PTK
0.5821
p.N288D
DO7997
COAD
ICGC
NPYTALP
CBL_PTK
0.5821
p.P296S
TCGA-B7-5816
STAD
TCGA
NPYTALP
CBL_PTK
0.2778
p.P296S
DO38599
STAD
ICGC
NPYTALP
CBL_PTK
0.2778
p.M283I
TCGA-BF-AAP1
SKCM
TCGA
NPYTALP
CBL_PTK
0.1944
p.M283I
DO219464
SKCM
ICGC
NPYTALP
CBL_PTK
0.1944
p.M287I
TCGA-D1-A16X
UCEC
TCGA
NPYTALP
CBL_PTK
0.3056
p.M287I
DO222363
MELA
ICGC
NPYTALP
CBL_PTK
0.3056
p.M287I
DO41799
UCEC
ICGC
NPYTALP
CBL_PTK
0.3056
p.G282E
TCGA-EE-A2GP
SKCM
TCGA
NPYTALP
CBL_PTK
0.1667
p.G282E
DO37422
SKCM
ICGC
NPYTALP
CBL_PTK
0.1667
p.G279V
TCGA-FS-A1ZG
SKCM
TCGA
NPYTALP
CBL_PTK
0.0833
p.G279V
DO37523
SKCM
ICGC
NPYTALP
CBL_PTK
0.0833
p.G285V
DO10809
EOPC
ICGC
NPYTALP
CBL_PTK
0.25
p.T291K
DO229031
LICA
ICGC
NPYTALP
CBL_PTK
0.7306
p.T295N
DO229009
LICA
ICGC
NPYTALP
CBL_PTK
0.3056
p.G278C
DO231141
LUSC
ICGC
NPYTALP
CBL_PTK
0.0556
p.P289L
DO222420
MELA
ICGC
NPYTALP
CBL_PTK
0.6471
p.L300M
SIDM01265
Plasma Cell Myeloma
GDSC
NPYTALP
CBL_PTK
0.1667
p.L300M
ACH-000763
Myeloma
CCLE
NPYTALP
CBL_PTK
0.1667
p.L300M
MM1S
haematopoietic_and_lymphoid_tissue
COSMIC
NPYTALP
CBL_PTK
0.1667
Drug responses associated with LMX1A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of NPYTALP
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8TE12
LIM homeobox transcription factor 1-alpha
CBL_PTK
288:294
NPYTALP
CBL
0.971
More...