DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PATPAPS
Uniprot ID:
Q12873
Source protein:
Chromodomain-helicase-DNA-binding protein 3
Source gene:
CHD3
Class:
DEG_SCF_FBW7_1
Location:
1555:1561
E3 ligase:
FBXW7
DEGRON score:
0.999
ASA_SCORE:
72.8429
COIL:
0.9197
CONS_SCORE:
0.25
DSS_SCORE:
0.7441
HELIX:
0.0321
FCONS_SCORE:
1.0754
RIG_SCORE:
0.5541
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S1555F
TCGA-06-5416
GBM
TCGA
PATPAPS
DEG_SCF_FBW7_1
0.7982
p.R1570C
TCGA-AJ-A3EK
UCEC
TCGA
PATPAPS
DEG_SCF_FBW7_1
0.0833
p.R1570C
TCGA-BS-A0UM
UCEC
TCGA
PATPAPS
DEG_SCF_FBW7_1
0.0833
p.R1570C
SIDM00145
T-Lymphoblastic Leukemia
GDSC
PATPAPS
DEG_SCF_FBW7_1
0.0833
p.R1570C
ACH-001127
Leukemia
CCLE
PATPAPS
DEG_SCF_FBW7_1
0.0833
p.R1570C
MOLT-4
haematopoietic_and_lymphoid_tissue
COSMIC
PATPAPS
DEG_SCF_FBW7_1
0.0833
p.L1571V
DO48579
BLCA
ICGC
PATPAPS
DEG_SCF_FBW7_1
0.0556
p.P1550L
DO222615
MELA
ICGC
PATPAPS
DEG_SCF_FBW7_1
0.1944
p.P1550L
DO38177
SKCM
ICGC
PATPAPS
DEG_SCF_FBW7_1
0.1944
p.T1557S
DO220042
SARC
ICGC
PATPAPS
DEG_SCF_FBW7_1
0.8227
p.N1568D
SIDM00281
Other Solid Cancers
GDSC
PATPAPS
DEG_SCF_FBW7_1
0.1389
p.N1568D
ACH-002100
Skin Cancer
CCLE
PATPAPS
DEG_SCF_FBW7_1
0.1389
p.N1568D
DJM-1
skin
COSMIC
PATPAPS
DEG_SCF_FBW7_1
0.1389
p.I1567V
SIDM00683
Prostate Carcinoma
GDSC
PATPAPS
DEG_SCF_FBW7_1
0.1667
p.I1567V
LNCaP-Clone-FGC
prostate
COSMIC
PATPAPS
DEG_SCF_FBW7_1
0.1667
p.R1550C
SIDM00487
Colorectal Carcinoma
GDSC
PATPAPS
DEG_SCF_FBW7_1
0.1944
p.R1550C
ACH-000963
Colon/Colorectal Cancer
CCLE
PATPAPS
DEG_SCF_FBW7_1
0.1944
p.R1550C
CCK-81
large_intestine
COSMIC
PATPAPS
DEG_SCF_FBW7_1
0.1944
Drug responses associated with CHD3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PATPAPS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q12873
Chromodomain-helicase-DNA-binding protein 3
DEG_SCF_FBW7_1
1555:1561
PATPAPS
FBXW7
0.999
More...