DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PATPRFS
Uniprot ID:
Q71F56
Source protein:
Mediator of RNA polymerase II transcription subunit 13-like
Source gene:
MED13L
Class:
DEG_SCF_FBW7_1
Location:
1041:1047
E3 ligase:
FBXW7
DEGRON score:
0.9792
ASA_SCORE:
96.4857
COIL:
0.946
CONS_SCORE:
0.3247
DSS_SCORE:
0.6985
HELIX:
0.021
FCONS_SCORE:
0.9929
RIG_SCORE:
0.6289
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R1045L
TCGA-85-A4CL
LUSC
TCGA
PATPRFS
DEG_SCF_FBW7_1
0.7316
p.R1045L
DO45454
LUSC
ICGC
PATPRFS
DEG_SCF_FBW7_1
0.7316
p.R1045H
DO233634
GACA
ICGC
PATPRFS
DEG_SCF_FBW7_1
0.7133
p.R1045P
DO221456
AML
ICGC
PATPRFS
DEG_SCF_FBW7_1
0.6401
p.A1042T
TCGA-AX-A3FS
UCEC
TCGA
PATPRFS
DEG_SCF_FBW7_1
0.6028
p.A1042T
TCGA-PG-A917
UCEC
TCGA
PATPRFS
DEG_SCF_FBW7_1
0.6028
p.A1042T
DO40879
UCEC
ICGC
PATPRFS
DEG_SCF_FBW7_1
0.6028
p.A1042T
DO52424
UCEC
ICGC
PATPRFS
DEG_SCF_FBW7_1
0.6028
p.P1057Q
TCGA-D3-A2J6
SKCM
TCGA
PATPRFS
DEG_SCF_FBW7_1
0.0556
p.P1057Q
DO37901
SKCM
ICGC
PATPRFS
DEG_SCF_FBW7_1
0.0556
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Drug responses associated with MED13L mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of PATPRFS
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q71F56
Mediator of RNA polymerase II transcription subunit 13-like
DEG_SCF_FBW7_1
1041:1047
PATPRFS
FBXW7
0.9792
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