DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PDTPPGT
Uniprot ID:
Q96T60
Source protein:
Bifunctional polynucleotide phosphatase/kinase
Source gene:
PNKP
Class:
DEG_SCF_FBW7_1
Location:
116:122
E3 ligase:
FBXW7
DEGRON score:
0.9945
ASA_SCORE:
83.6
COIL:
0.9343
CONS_SCORE:
0.2799
DSS_SCORE:
0.8382
HELIX:
0.0144
FCONS_SCORE:
1.0699
RIG_SCORE:
0.5551
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L124V
TCGA-67-3771
LUAD
TCGA
PDTPPGT
DEG_SCF_FBW7_1
0.2778
p.L124V
DO25797
LUAD
ICGC
PDTPPGT
DEG_SCF_FBW7_1
0.2778
p.S126F
TCGA-AX-A2HC
UCEC
TCGA
PDTPPGT
DEG_SCF_FBW7_1
0.6667
p.S126F
DO41572
UCEC
ICGC
PDTPPGT
DEG_SCF_FBW7_1
0.6667
p.P119L
TCGA-BS-A0UF
UCEC
TCGA
PDTPPGT
DEG_SCF_FBW7_1
0.7582
p.P119L
DO41488
UCEC
ICGC
PDTPPGT
DEG_SCF_FBW7_1
0.7582
p.P119L
ACH-001184
Sarcoma
CCLE
PDTPPGT
DEG_SCF_FBW7_1
0.7582
p.W106C
TCGA-CR-7388
HNSC
TCGA
PDTPPGT
DEG_SCF_FBW7_1
0.0556
p.W106C
TCGA-EE-A2GN
SKCM
TCGA
PDTPPGT
DEG_SCF_FBW7_1
0.0556
p.W106C
DO14284
HNSC
ICGC
PDTPPGT
DEG_SCF_FBW7_1
0.0556
p.W106C
DO37896
SKCM
ICGC
PDTPPGT
DEG_SCF_FBW7_1
0.0556
p.D117Y
TCGA-DA-A1I1
SKCM
TCGA
PDTPPGT
DEG_SCF_FBW7_1
0.6214
p.D117Y
DO37966
SKCM
ICGC
PDTPPGT
DEG_SCF_FBW7_1
0.6214
p.P112R
DO52481
COCA
ICGC
PDTPPGT
DEG_SCF_FBW7_1
0.2222
p.P119S
DO220891
MELA
ICGC
PDTPPGT
DEG_SCF_FBW7_1
0.6752
p.P119S
ACH-001184
Sarcoma
CCLE
PDTPPGT
DEG_SCF_FBW7_1
0.6752
p.S126T
SIDM01045
Endometrial Carcinoma
GDSC
PDTPPGT
DEG_SCF_FBW7_1
0.6667
p.S126T
ACH-000978
Endometrial/Uterine Cancer
CCLE
PDTPPGT
DEG_SCF_FBW7_1
0.6667
p.S126T
EN
endometrium
COSMIC
PDTPPGT
DEG_SCF_FBW7_1
0.6667
p.R110H
SIDM00145
T-Lymphoblastic Leukemia
GDSC
PDTPPGT
DEG_SCF_FBW7_1
0.1667
p.R110H
ACH-001127
Leukemia
CCLE
PDTPPGT
DEG_SCF_FBW7_1
0.1667
p.R110H
MOLT-4
haematopoietic_and_lymphoid_tissue
COSMIC
PDTPPGT
DEG_SCF_FBW7_1
0.1667
p.R110C
SIDM00975
Melanoma
GDSC
PDTPPGT
DEG_SCF_FBW7_1
0.1667
p.R110C
ACH-002206
Skin Cancer
CCLE
PDTPPGT
DEG_SCF_FBW7_1
0.1667
p.R110C
WM278
skin
COSMIC
PDTPPGT
DEG_SCF_FBW7_1
0.1667
Drug responses associated with PNKP mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PDTPPGT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q96T60
Bifunctional polynucleotide phosphatase/kinase
DEG_SCF_FBW7_1
116:122
PDTPPGT
FBXW7
0.9945
More...