DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PNPTPYFE
Uniprot ID:
Q71RC2
Source protein:
La-related protein 4
Source gene:
LARP4
Class:
DEG_SCF_FBW7_2
Location:
329:336
E3 ligase:
FBXW7
DEGRON score:
0.6025
ASA_SCORE:
70.15
COIL:
0.8563
CONS_SCORE:
0.4381
DSS_SCORE:
0.3399
HELIX:
0.0449
FCONS_SCORE:
0.9581
RIG_SCORE:
0.726
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E336V
TCGA-21-A5DI
LUSC
TCGA
PNPTPYFE
DEG_SCF_FBW7_2
0.7693
p.E336V
DO45455
LUSC
ICGC
PNPTPYFE
DEG_SCF_FBW7_2
0.7693
p.L339P
TCGA-A4-8311
KIRP
TCGA
PNPTPYFE
DEG_SCF_FBW7_2
0.25
p.L339P
DO44523
KIRP
ICGC
PNPTPYFE
DEG_SCF_FBW7_2
0.25
p.P341H
TCGA-EE-A2GE
SKCM
TCGA
PNPTPYFE
DEG_SCF_FBW7_2
0.1944
p.P341H
DO38016
SKCM
ICGC
PNPTPYFE
DEG_SCF_FBW7_2
0.1944
p.R335I
DO1285
BRCA
ICGC
PNPTPYFE
DEG_SCF_FBW7_2
0.8102
p.P338S
DO51642
CESC
ICGC
PNPTPYFE
DEG_SCF_FBW7_2
0.2778
p.V319G
DO222798
COCA
ICGC
PNPTPYFE
DEG_SCF_FBW7_2
0.0556
p.W327C
DO229031
LICA
ICGC
PNPTPYFE
DEG_SCF_FBW7_2
0.2778
p.S323F
DO37819
SKCM
ICGC
PNPTPYFE
DEG_SCF_FBW7_2
0.1667
p.S323F
DO47700
SKCM
ICGC
PNPTPYFE
DEG_SCF_FBW7_2
0.1667
p.N336H
DO43202
UCEC
ICGC
PNPTPYFE
DEG_SCF_FBW7_2
0.7423
p.Y340S
SIDM00255
Neuroblastoma
GDSC
PNPTPYFE
DEG_SCF_FBW7_2
0.2222
p.Y340S
NB17
autonomic_ganglia
COSMIC
PNPTPYFE
DEG_SCF_FBW7_2
0.2222
p.Y334S
ACH-002282
Neuroblastoma
CCLE
PNPTPYFE
DEG_SCF_FBW7_2
0.6009
p.Y334S
NB17
autonomic_ganglia
COSMIC
PNPTPYFE
DEG_SCF_FBW7_2
0.6009
p.Y333S
NB17
autonomic_ganglia
COSMIC
PNPTPYFE
DEG_SCF_FBW7_2
0.712
p.T319A
EB2
haematopoietic_and_lymphoid_tissue
COSMIC
PNPTPYFE
DEG_SCF_FBW7_2
0.0556
p.N344T
Farage
haematopoietic_and_lymphoid_tissue
COSMIC
PNPTPYFE
DEG_SCF_FBW7_2
0.1111
p.R341Q
NCI-H2052
pleura
COSMIC
PNPTPYFE
DEG_SCF_FBW7_2
0.1944
p.N343T
Farage
haematopoietic_and_lymphoid_tissue
COSMIC
PNPTPYFE
DEG_SCF_FBW7_2
0.1389
p.R342Q
NCI-H2052
pleura
COSMIC
PNPTPYFE
DEG_SCF_FBW7_2
0.1667
Drug responses associated with LARP4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PNPTPYFE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q71RC2
La-related protein 4
DEG_SCF_FBW7_2
329:336
PNPTPYFE
FBXW7
0.6025
More...