DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PPITPMKS
Uniprot ID:
O95985
Source protein:
DNA topoisomerase 3-beta-1
Source gene:
TOP3B
Class:
DEG_SCF_FBW7_1
Location:
388:395
E3 ligase:
FBXW7
DEGRON score:
0.8141
ASA_SCORE:
63.0875
COIL:
0.8229
CONS_SCORE:
0.5608
DSS_SCORE:
0.6366
HELIX:
0.0318
FCONS_SCORE:
1.3826
RIG_SCORE:
0.6871
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A405S
TCGA-44-7661
LUAD
TCGA
PPITPMKS
DEG_SCF_FBW7_1
0.0556
p.A396G
TCGA-D9-A6EA
SKCM
TCGA
PPITPMKS
DEG_SCF_FBW7_1
0.3056
p.D383G
TCGA-DI-A1BU
UCEC
TCGA
PPITPMKS
DEG_SCF_FBW7_1
0.1944
p.R379Q
TCGA-GN-A4U7
SKCM
TCGA
PPITPMKS
DEG_SCF_FBW7_1
0.0833
p.E398D
TCGA-L5-A8NM
ESCA
TCGA
PPITPMKS
DEG_SCF_FBW7_1
0.25
p.A384V
SIDM00781
Colorectal Carcinoma
GDSC
PPITPMKS
DEG_SCF_FBW7_1
0.2222
p.A384V
SIDM00780
Colorectal Carcinoma
GDSC
PPITPMKS
DEG_SCF_FBW7_1
0.2222
p.A384V
ACH-000967
Colon/Colorectal Cancer
CCLE
PPITPMKS
DEG_SCF_FBW7_1
0.2222
p.A384V
ACH-001199
Colon/Colorectal Cancer
CCLE
PPITPMKS
DEG_SCF_FBW7_1
0.2222
p.A384V
SNU-C2B
large_intestine
COSMIC
PPITPMKS
DEG_SCF_FBW7_1
0.2222
p.A405V
SIDM00889
Cervical Carcinoma
GDSC
PPITPMKS
DEG_SCF_FBW7_1
0.0556
p.A405V
C-33-A
cervix
COSMIC
PPITPMKS
DEG_SCF_FBW7_1
0.0556
p.P378L
SIDM00333
Endometrial Carcinoma
GDSC
PPITPMKS
DEG_SCF_FBW7_1
0.0556
p.P378L
ACH-000988
Endometrial/Uterine Cancer
CCLE
PPITPMKS
DEG_SCF_FBW7_1
0.0556
p.P378L
MFE-319
endometrium
COSMIC
PPITPMKS
DEG_SCF_FBW7_1
0.0556
Drug responses associated with TOP3B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPITPMKS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95985
DNA topoisomerase 3-beta-1
DEG_SCF_FBW7_1
388:395
PPITPMKS
FBXW7
0.8141
More...