DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PQDTPAQS
Uniprot ID:
Q8IWN7
Source protein:
Retinitis pigmentosa 1-like 1 protein
Source gene:
RP1L1
Class:
DEG_SCF_FBW7_1
Location:
293:300
E3 ligase:
FBXW7
DEGRON score:
0.8409
ASA_SCORE:
76.075
COIL:
0.849
CONS_SCORE:
0.4145
DSS_SCORE:
0.8473
HELIX:
0.0978
FCONS_SCORE:
0.7796
RIG_SCORE:
0.567
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S300L
TCGA-AA-A010
COAD
TCGA
PQDTPAQS
DEG_SCF_FBW7_1
0.7667
p.S300L
SIDM00052
Esophageal Squamous Cell Carcinoma
GDSC
PQDTPAQS
DEG_SCF_FBW7_1
0.7667
p.T296M
TCGA-55-7727
LUAD
TCGA
PQDTPAQS
DEG_SCF_FBW7_1
0.7423
p.T296M
DO234149
ESAD
ICGC
PQDTPAQS
DEG_SCF_FBW7_1
0.7423
p.T296M
DO233119
GACA
ICGC
PQDTPAQS
DEG_SCF_FBW7_1
0.7423
p.T296M
DO24297
LUAD
ICGC
PQDTPAQS
DEG_SCF_FBW7_1
0.7423
p.H292Y
DO50970
LICA
ICGC
PQDTPAQS
DEG_SCF_FBW7_1
0.3056
p.P302L
TCGA-2W-A8YY
CESC
TCGA
PQDTPAQS
DEG_SCF_FBW7_1
0.2778
p.P302L
DO223732
CESC
ICGC
PQDTPAQS
DEG_SCF_FBW7_1
0.2778
p.P302L
SIDM01752
Pancreatic Carcinoma
GDSC
PQDTPAQS
DEG_SCF_FBW7_1
0.2778
p.P302L
ACH-000685
Pancreatic Cancer
CCLE
PQDTPAQS
DEG_SCF_FBW7_1
0.2778
p.R291M
TCGA-ER-A19P
SKCM
TCGA
PQDTPAQS
DEG_SCF_FBW7_1
0.2778
p.R291M
DO47623
SKCM
ICGC
PQDTPAQS
DEG_SCF_FBW7_1
0.2778
p.G290S
DO222868
MELA
ICGC
PQDTPAQS
DEG_SCF_FBW7_1
0.25
p.P289T
TCGA-55-7913
LUAD
TCGA
PQDTPAQS
DEG_SCF_FBW7_1
0.2222
p.P289T
DO223665
LUAD
ICGC
PQDTPAQS
DEG_SCF_FBW7_1
0.2222
p.P287T
TCGA-91-8499
LUAD
TCGA
PQDTPAQS
DEG_SCF_FBW7_1
0.1667
p.P287T
DO45349
LUAD
ICGC
PQDTPAQS
DEG_SCF_FBW7_1
0.1667
p.K310N
TCGA-EO-A3B0
UCEC
TCGA
PQDTPAQS
DEG_SCF_FBW7_1
0.1667
p.K310N
DO219773
UCEC
ICGC
PQDTPAQS
DEG_SCF_FBW7_1
0.1667
p.D307N
TCGA-66-2742
LUSC
TCGA
PQDTPAQS
DEG_SCF_FBW7_1
0.1389
p.D307N
TCGA-ER-A2NE
SKCM
TCGA
PQDTPAQS
DEG_SCF_FBW7_1
0.1389
p.D307N
DO26439
LUSC
ICGC
PQDTPAQS
DEG_SCF_FBW7_1
0.1389
p.D307N
DO48663
SKCM
ICGC
PQDTPAQS
DEG_SCF_FBW7_1
0.1389
p.D308V
TCGA-55-8092
LUAD
TCGA
PQDTPAQS
DEG_SCF_FBW7_1
0.1111
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Drug responses associated with RP1L1 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of PQDTPAQS
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8IWN7
Retinitis pigmentosa 1-like 1 protein
DEG_SCF_FBW7_1
293:300
PQDTPAQS
FBXW7
0.8409
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