DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PRKNLDVMK
Uniprot ID:
O00567
Source protein:
Nucleolar protein 56
Source gene:
NOP56
Class:
DEG_APCC_DBOX_1
Location:
414:422
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9728
ASA_SCORE:
89.3111
COIL:
0.4996
CONS_SCORE:
0.492
DSS_SCORE:
0.3642
HELIX:
0.4877
FCONS_SCORE:
1.2
RIG_SCORE:
0.795
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R415Q
TCGA-19-5956
GBM
TCGA
PRKNLDVMK
DEG_APCC_DBOX_1
0.7329
p.R415Q
DO13863
GBM
ICGC
PRKNLDVMK
DEG_APCC_DBOX_1
0.7329
p.E409Q
TCGA-55-7281
LUAD
TCGA
PRKNLDVMK
DEG_APCC_DBOX_1
0.1944
p.E409Q
DO25985
LUAD
ICGC
PRKNLDVMK
DEG_APCC_DBOX_1
0.1944
p.A431V
TCGA-AX-A1CE
UCEC
TCGA
PRKNLDVMK
DEG_APCC_DBOX_1
0.0833
p.A431V
TCGA-L5-A8NM
ESCA
TCGA
PRKNLDVMK
DEG_APCC_DBOX_1
0.0833
p.A431V
DO42280
UCEC
ICGC
PRKNLDVMK
DEG_APCC_DBOX_1
0.0833
p.N417I
TCGA-OR-A5LB
ACC
TCGA
PRKNLDVMK
DEG_APCC_DBOX_1
0.6169
p.M425V
DO231096
LUSC
ICGC
PRKNLDVMK
DEG_APCC_DBOX_1
0.25
p.K422R
SIDM00999
Bladder Carcinoma
GDSC
PRKNLDVMK
DEG_APCC_DBOX_1
0.6126
p.K422R
ACH-000973
Bladder Cancer
CCLE
PRKNLDVMK
DEG_APCC_DBOX_1
0.6126
p.K422R
639-V
urinary_tract
COSMIC
PRKNLDVMK
DEG_APCC_DBOX_1
0.6126
Drug responses associated with NOP56 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PRKNLDVMK
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00567
Nucleolar protein 56
DEG_APCC_DBOX_1
414:422
PRKNLDVMK
APC,CDC20,FZR1
0.9728
More...