DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PSPTPSSS
Uniprot ID:
Q17RY0
Source protein:
Cytoplasmic polyadenylation element-binding protein 4
Source gene:
CPEB4
Class:
DEG_SCF_FBW7_1
Location:
291:298
E3 ligase:
FBXW7
DEGRON score:
0.9983
ASA_SCORE:
75.5625
COIL:
0.9543
CONS_SCORE:
0.3829
DSS_SCORE:
0.6151
HELIX:
0.0268
FCONS_SCORE:
1.0911
RIG_SCORE:
0.5232
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V297L
SW156
kidney
COSMIC
PSPTPSSS
DEG_SCF_FBW7_1
0.6765
p.C299G
COLO-684
endometrium
COSMIC
PSPTPSSS
DEG_SCF_FBW7_1
0.3056
p.Y288C
TCGA-22-4599
LUSC
TCGA
PSPTPSSS
DEG_SCF_FBW7_1
0.25
p.Y288C
DO26945
LUSC
ICGC
PSPTPSSS
DEG_SCF_FBW7_1
0.25
p.G303C
TCGA-FS-A1YW
SKCM
TCGA
PSPTPSSS
DEG_SCF_FBW7_1
0.1944
p.G303C
DO37734
SKCM
ICGC
PSPTPSSS
DEG_SCF_FBW7_1
0.1944
p.G303V
SIDM00168
Head and Neck Carcinoma
GDSC
PSPTPSSS
DEG_SCF_FBW7_1
0.1944
p.G303V
ACH-000549
Head and Neck Cancer
CCLE
PSPTPSSS
DEG_SCF_FBW7_1
0.1944
p.G304V
DO229027
LICA
ICGC
PSPTPSSS
DEG_SCF_FBW7_1
0.1667
p.C282G
COLO-684
endometrium
COSMIC
PSPTPSSS
DEG_SCF_FBW7_1
0.0833
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Drug responses associated with CPEB4 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of PSPTPSSS
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q17RY0
Cytoplasmic polyadenylation element-binding protein 4
DEG_SCF_FBW7_1
291:298
PSPTPSSS
FBXW7
0.9983
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