DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPAST
Uniprot ID:
Q9H3R0
Source protein:
Lysine-specific demethylase 4C
Source gene:
KDM4C
Class:
DEG_SCF_FBW7_1
Location:
348:353
E3 ligase:
FBXW7
DEGRON score:
0.7579
ASA_SCORE:
71.3667
COIL:
0.956
CONS_SCORE:
0.3642
DSS_SCORE:
0.4822
HELIX:
0.0225
FCONS_SCORE:
1.1215
RIG_SCORE:
0.6883
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P348L
TCGA-DD-A1EB
LIHC
TCGA
PTPAST
DEG_SCF_FBW7_1
0.6471
p.P348L
DO22836
LIHC
ICGC
PTPAST
DEG_SCF_FBW7_1
0.6471
p.K338N
TCGA-E2-A15A
BRCA
TCGA
PTPAST
DEG_SCF_FBW7_1
0.5
p.K338N
DO1357
BRCA
ICGC
PTPAST
DEG_SCF_FBW7_1
0.5
p.A351S
DO228952
LICA
ICGC
PTPAST
DEG_SCF_FBW7_1
0.6477
p.W359C
DO229034
LICA
ICGC
PTPAST
DEG_SCF_FBW7_1
0.1667
p.T349I
SIDM00421
T-Cell Non-Hodgkin's Lymphoma
GDSC
PTPAST
DEG_SCF_FBW7_1
0.7078
p.T349I
ACH-000226
Lymphoma
CCLE
PTPAST
DEG_SCF_FBW7_1
0.7078
p.T349I
SUP-M2
haematopoietic_and_lymphoid_tissue
COSMIC
PTPAST
DEG_SCF_FBW7_1
0.7078
p.Y341C
SIDM00466
Ovarian Carcinoma
GDSC
PTPAST
DEG_SCF_FBW7_1
0.1389
p.Y341C
ACH-000443
Ovarian Cancer
CCLE
PTPAST
DEG_SCF_FBW7_1
0.1389
p.Y341C
OVKATE
ovary
COSMIC
PTPAST
DEG_SCF_FBW7_1
0.1389
p.D344E
SIDM00711
Squamous Cell Lung Carcinoma
GDSC
PTPAST
DEG_SCF_FBW7_1
0.2222
p.D344E
ACH-000727
Lung Cancer
CCLE
PTPAST
DEG_SCF_FBW7_1
0.2222
p.D344E
NCI-H2066
lung
COSMIC
PTPAST
DEG_SCF_FBW7_1
0.2222
p.P340R
HCC-15
lung
COSMIC
PTPAST
DEG_SCF_FBW7_1
0.1111
p.V363I
MRK-nu-1
breast
COSMIC
PTPAST
DEG_SCF_FBW7_1
0.0556
p.Y363C
OVKATE
ovary
COSMIC
PTPAST
DEG_SCF_FBW7_1
0.0556
Drug responses associated with KDM4C mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPAST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9H3R0
Lysine-specific demethylase 4C
DEG_SCF_FBW7_1
348:353
PTPAST
FBXW7
0.7579
More...