DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPKCE
Uniprot ID:
Q9UGL1
Source protein:
Lysine-specific demethylase 5B
Source gene:
KDM5B
Class:
DEG_SCF_FBW7_2
Location:
263:268
E3 ligase:
FBXW7
DEGRON score:
0.9971
ASA_SCORE:
86.15
COIL:
0.7487
CONS_SCORE:
0.2527
DSS_SCORE:
0.584
HELIX:
0.2203
FCONS_SCORE:
1.0923
RIG_SCORE:
0.6836
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R258H
TCGA-AR-A250
BRCA
TCGA
PTPKCE
DEG_SCF_FBW7_2
0.1944
p.R258H
DO1802
BRCA
ICGC
PTPKCE
DEG_SCF_FBW7_2
0.1944
p.L256V
TCGA-BR-7716
STAD
TCGA
PTPKCE
DEG_SCF_FBW7_2
0.1389
p.L256V
DO38675
STAD
ICGC
PTPKCE
DEG_SCF_FBW7_2
0.1389
p.N255S
TCGA-CV-7235
HNSC
TCGA
PTPKCE
DEG_SCF_FBW7_2
0.1111
p.N255S
DO15102
HNSC
ICGC
PTPKCE
DEG_SCF_FBW7_2
0.1111
p.R258C
TCGA-CZ-5466
KIRC
TCGA
PTPKCE
DEG_SCF_FBW7_2
0.1944
p.R258C
DO17927
KIRC
ICGC
PTPKCE
DEG_SCF_FBW7_2
0.1944
p.S272F
DO219723
CESC
ICGC
PTPKCE
DEG_SCF_FBW7_2
0.2222
p.R258S
DO228948
LICA
ICGC
PTPKCE
DEG_SCF_FBW7_2
0.1944
p.K278Q
DO50869
LICA
ICGC
PTPKCE
DEG_SCF_FBW7_2
0.5
p.S275I
DO50869
LICA
ICGC
PTPKCE
DEG_SCF_FBW7_2
0.1389
Drug responses associated with KDM5B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPKCE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9UGL1
Lysine-specific demethylase 5B
DEG_SCF_FBW7_2
263:268
PTPKCE
FBXW7
0.9971
More...