DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPKRS
Uniprot ID:
P49916
Source protein:
DNA ligase 3
Source gene:
LIG3
Class:
DEG_SCF_FBW7_1
Location:
243:248
E3 ligase:
FBXW7
DEGRON score:
0.7566
ASA_SCORE:
96.85
COIL:
0.9145
CONS_SCORE:
0.2239
DSS_SCORE:
0.6352
HELIX:
0.0438
FCONS_SCORE:
0.7762
RIG_SCORE:
0.5717
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P256L
TCGA-AZ-6598
COAD
TCGA
PTPKRS
DEG_SCF_FBW7_1
0.1111
p.P256L
DO10276
COAD
ICGC
PTPKRS
DEG_SCF_FBW7_1
0.1111
p.P256L
SIDM00663
Melanoma
GDSC
PTPKRS
DEG_SCF_FBW7_1
0.1111
p.P256L
ACH-000814
Skin Cancer
CCLE
PTPKRS
DEG_SCF_FBW7_1
0.1111
p.P256L
Hs939-T
skin
COSMIC
PTPKRS
DEG_SCF_FBW7_1
0.1111
p.S236C
TCGA-BH-A18M
BRCA
TCGA
PTPKRS
DEG_SCF_FBW7_1
0.5833
p.S236C
DO4245
BRCA
ICGC
PTPKRS
DEG_SCF_FBW7_1
0.5833
p.E238K
TCGA-D1-A17Q
UCEC
TCGA
PTPKRS
DEG_SCF_FBW7_1
0.1944
p.E238K
DO41903
UCEC
ICGC
PTPKRS
DEG_SCF_FBW7_1
0.1944
p.S242G
DO234318
ESAD
ICGC
PTPKRS
DEG_SCF_FBW7_1
0.75
p.H258Y
SIDM00217
Colorectal Carcinoma
GDSC
PTPKRS
DEG_SCF_FBW7_1
0.0556
p.H258Y
ACH-000999
Colon/Colorectal Cancer
CCLE
PTPKRS
DEG_SCF_FBW7_1
0.0556
p.H258Y
SNU-1040
large_intestine
COSMIC
PTPKRS
DEG_SCF_FBW7_1
0.0556
p.G237E
ACH-000328
Brain Cancer
CCLE
PTPKRS
DEG_SCF_FBW7_1
0.1667
p.S242R
ACH-000941
Endometrial/Uterine Cancer
CCLE
PTPKRS
DEG_SCF_FBW7_1
0.75
Drug responses associated with LIG3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPKRS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P49916
DNA ligase 3
DEG_SCF_FBW7_1
243:248
PTPKRS
FBXW7
0.7566
More...