DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPVCT
Uniprot ID:
Q9BYG3
Source protein:
MKI67 FHA domain-interacting nucleolar phosphoprotein
Source gene:
NIFK
Class:
DEG_SCF_FBW7_1
Location:
233:238
E3 ligase:
FBXW7
DEGRON score:
0.9991
ASA_SCORE:
82.3333
COIL:
0.9438
CONS_SCORE:
0.3029
DSS_SCORE:
0.5737
HELIX:
0.0245
FCONS_SCORE:
1.0116
RIG_SCORE:
0.7128
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T234S
SIDM00523
Small Cell Lung Carcinoma
GDSC
PTPVCT
DEG_SCF_FBW7_1
0.8227
p.S247C
SIDM00491
Thyroid Gland Carcinoma
GDSC
PTPVCT
DEG_SCF_FBW7_1
0.5278
p.S247C
ASH-3
thyroid
COSMIC
PTPVCT
DEG_SCF_FBW7_1
0.5278
p.G232D
TCGA-BR-4184
STAD
TCGA
PTPVCT
DEG_SCF_FBW7_1
0.3056
p.R245Q
SIDM01398
Melanoma
GDSC
PTPVCT
DEG_SCF_FBW7_1
0.1389
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Drug responses associated with NIFK mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of PTPVCT
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9BYG3
MKI67 FHA domain-interacting nucleolar phosphoprotein
DEG_SCF_FBW7_1
233:238
PTPVCT
FBXW7
0.9991
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