DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PVTPASS
Uniprot ID:
Q9NXJ0
Source protein:
Membrane-spanning 4-domains subfamily A member 12
Source gene:
MS4A12
Class:
DEG_SCF_FBW7_1
Location:
246:252
E3 ligase:
FBXW7
DEGRON score:
0.8889
ASA_SCORE:
84.3714
COIL:
0.9544
CONS_SCORE:
0.3127
DSS_SCORE:
0.4891
HELIX:
0.018
FCONS_SCORE:
0.9027
RIG_SCORE:
0.6399
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N260Y
TCGA-20-0996
OV
TCGA
PVTPASS
DEG_SCF_FBW7_1
0.1111
p.S244R
TCGA-73-4659
LUAD
TCGA
PVTPASS
DEG_SCF_FBW7_1
0.7222
p.P255H
TCGA-AA-A010
COAD
TCGA
PVTPASS
DEG_SCF_FBW7_1
0.25
p.A250P
TCGA-BC-A8YO
LIHC
TCGA
PVTPASS
DEG_SCF_FBW7_1
0.6392
p.A250P
DO49658
LIHC
ICGC
PVTPASS
DEG_SCF_FBW7_1
0.6392
p.S252Y
TCGA-D1-A17Q
UCEC
TCGA
PVTPASS
DEG_SCF_FBW7_1
0.712
p.A250V
TCGA-D5-6538
COAD
TCGA
PVTPASS
DEG_SCF_FBW7_1
0.5825
p.M241I
DO228971
LICA
ICGC
PVTPASS
DEG_SCF_FBW7_1
0.1944
p.N260I
SIDM00735
Small Cell Lung Carcinoma
GDSC
PVTPASS
DEG_SCF_FBW7_1
0.1111
p.N260I
ACH-000298
Lung Cancer
CCLE
PVTPASS
DEG_SCF_FBW7_1
0.1111
p.N260I
NCI-H2029
lung
COSMIC
PVTPASS
DEG_SCF_FBW7_1
0.1111
p.S251F
SIDM00951
T-Lymphoblastic Leukemia
GDSC
PVTPASS
DEG_SCF_FBW7_1
0.6871
p.S251F
ACH-002222
Leukemia
CCLE
PVTPASS
DEG_SCF_FBW7_1
0.6871
p.S251F
CTV-1
haematopoietic_and_lymphoid_tissue
COSMIC
PVTPASS
DEG_SCF_FBW7_1
0.6871
Drug responses associated with MS4A12 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PVTPASS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NXJ0
Membrane-spanning 4-domains subfamily A member 12
DEG_SCF_FBW7_1
246:252
PVTPASS
FBXW7
0.8889
More...