DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PVTPKLT
Uniprot ID:
Q14676
Source protein:
Mediator of DNA damage checkpoint protein 1
Source gene:
MDC1
Class:
DEG_SCF_FBW7_1
Location:
1628:1634
E3 ligase:
FBXW7
DEGRON score:
0.9985
ASA_SCORE:
103.4286
COIL:
0.9647
CONS_SCORE:
0.3635
DSS_SCORE:
0.7676
HELIX:
0.0147
FCONS_SCORE:
1.1938
RIG_SCORE:
0.6862
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T1634I
TCGA-EC-A1QX
UCEC
TCGA
PVTPKLT
DEG_SCF_FBW7_1
0.7078
p.P1628L
SIDM01032
Esophageal Squamous Cell Carcinoma
GDSC
PVTPKLT
DEG_SCF_FBW7_1
0.6471
p.P1628L
ACH-000823
Esophageal Cancer
CCLE
PVTPKLT
DEG_SCF_FBW7_1
0.6471
p.P1628L
KYSE-140
oesophagus
COSMIC
PVTPKLT
DEG_SCF_FBW7_1
0.6471
p.R1644M
TCGA-VQ-A8P2
STAD
TCGA
PVTPKLT
DEG_SCF_FBW7_1
0.0556
p.R1644S
SIDM01173
Rhabdomyosarcoma
GDSC
PVTPKLT
DEG_SCF_FBW7_1
0.0556
p.R1644S
SIDM01318
Hepatocellular Carcinoma
GDSC
PVTPKLT
DEG_SCF_FBW7_1
0.0556
p.R1644S
SIDM01686
Chronic Myelogenous Leukemia
GDSC
PVTPKLT
DEG_SCF_FBW7_1
0.0556
p.E1618K
ACH-002019
Cervical Cancer
CCLE
PVTPKLT
DEG_SCF_FBW7_1
0.0556
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Drug responses associated with MDC1 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of PVTPKLT
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SCF_FBW7_1
1628:1634
PVTPKLT
FBXW7
0.9985
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