DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
REFVYQE
Uniprot ID:
Q8TBC5
Source protein:
Zinc finger and SCAN domain-containing protein 18
Source gene:
ZSCAN18
Class:
LIG_APCC_ABBAyCdc20_2
Location:
53:59
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.739
ASA_SCORE:
78.8714
COIL:
0.6861
CONS_SCORE:
0.6136
DSS_SCORE:
0.2865
HELIX:
0.0971
FCONS_SCORE:
1.0003
RIG_SCORE:
0.8266
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A63G
TCGA-86-8585
LUAD
TCGA
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.2222
p.A63G
DO24850
LUAD
ICGC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.2222
p.S69G
TCGA-94-A5I6
LUSC
TCGA
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.0556
p.S69G
DO219176
LUSC
ICGC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.0556
p.P59H
TCGA-A6-5666
COAD
TCGA
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.7694
p.A63V
TCGA-BR-4369
STAD
TCGA
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.2222
p.A63V
DO233210
GACA
ICGC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.2222
p.A63V
DO38659
STAD
ICGC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.2222
p.P59S
TCGA-D3-A8GB
SKCM
TCGA
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.6752
p.R53H
TCGA-DI-A1BU
UCEC
TCGA
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.8244
p.R53H
DO218227
BTCA
ICGC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.8244
p.R53H
DO42023
UCEC
ICGC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.8244
p.R53H
SIDM00895
B-Cell Non-Hodgkin's Lymphoma
GDSC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.8244
p.S66F
TCGA-EE-A2MD
SKCM
TCGA
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.1389
p.S66F
DO222434
MELA
ICGC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.1389
p.S66F
DO37851
SKCM
ICGC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.1389
p.V64A
DO222576
COCA
ICGC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.1944
p.P50S
DO234191
ESAD
ICGC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.25
p.T49K
DO229026
LICA
ICGC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.2222
p.S69C
DO23398
LINC
ICGC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.0556
p.R63S
DO47623
SKCM
ICGC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.2222
p.R53Q
DO48040
STAD
ICGC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.7329
p.P67S
SIDM00422
Hodgkin's Lymphoma
GDSC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.1111
p.P67S
ACH-001203
Lymphoma
CCLE
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.1111
p.P67S
SUP-HD1
haematopoietic_and_lymphoid_tissue
COSMIC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.1111
p.P67H
SIDM00902
Non-Small Cell Lung Carcinoma
GDSC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.1111
p.P67H
ACH-002337
Lung Cancer
CCLE
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.1111
p.A65D
ACH-000884
Skin Cancer
CCLE
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.1667
p.A45T
SNU-407
large_intestine
COSMIC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.1111
p.P46H
TUR
haematopoietic_and_lymphoid_tissue
COSMIC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.1389
p.D44N
NCI-H2009
lung
COSMIC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.0833
p.P44L
RCC-FG2
kidney
COSMIC
REFVYQE
LIG_APCC_ABBAyCdc20_2
0.0833
Drug responses associated with ZSCAN18 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of REFVYQE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8TBC5
Zinc finger and SCAN domain-containing protein 18
LIG_APCC_ABBAyCdc20_2
53:59
REFVYQE
APC,CDC20,FZR1
0.739
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