DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
RGAVFVD
Uniprot ID:
Q8WVT3
Source protein:
Trafficking protein particle complex subunit 12
Source gene:
TRAPPC12
Class:
LIG_APCC_ABBAyCdc20_2
Location:
328:334
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.937
ASA_SCORE:
71.3
COIL:
0.8213
CONS_SCORE:
0.3241
DSS_SCORE:
0.3029
HELIX:
0.049
FCONS_SCORE:
0.8589
RIG_SCORE:
0.8343
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V333M
TCGA-5L-AAT1
BRCA
TCGA
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.6097
p.V333M
DO219594
BRCA
ICGC
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.6097
p.V333M
SIDM01086
B-Lymphoblastic Leukemia
GDSC
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.6097
p.V333M
ACH-000874
Leukemia
CCLE
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.6097
p.V333M
RS4-11
haematopoietic_and_lymphoid_tissue
COSMIC
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.6097
p.T325A
TCGA-AX-A2HJ
UCEC
TCGA
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.25
p.T325A
DO42105
UCEC
ICGC
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.25
p.R321Q
TCGA-B8-5163
KIRC
TCGA
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.1389
p.R321Q
DO18978
KIRC
ICGC
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.1389
p.L338F
TCGA-D6-6516
HNSC
TCGA
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.2222
p.L338F
DO15623
HNSC
ICGC
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.2222
p.G329D
DO50970
LICA
ICGC
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.6087
p.R328C
DO228138
PBCA
ICGC
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.8301
p.R321W
SIDM00216
Colorectal Carcinoma
GDSC
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.1389
p.R321W
ACH-000989
Colon/Colorectal Cancer
CCLE
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.1389
p.R321W
SNU-175
large_intestine
COSMIC
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.1389
p.R328H
ACH-001369
Ovarian Cancer
CCLE
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.8244
p.V319I
ACH-001515
Cervical Cancer
CCLE
RGAVFVD
LIG_APCC_ABBAyCdc20_2
0.0833
Drug responses associated with TRAPPC12 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RGAVFVD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8WVT3
Trafficking protein particle complex subunit 12
LIG_APCC_ABBAyCdc20_2
328:334
RGAVFVD
APC,CDC20,FZR1
0.937
More...