DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
RGPMYDD
Uniprot ID:
P51608
Source protein:
Methyl-CpG-binding protein 2
Source gene:
MECP2
Class:
LIG_APCC_ABBAyCdc20_2
Location:
91:97
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9274
ASA_SCORE:
84.0143
COIL:
0.8769
CONS_SCORE:
0.5491
DSS_SCORE:
0.6081
HELIX:
0.0507
FCONS_SCORE:
0.8987
RIG_SCORE:
0.6655
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S82Y
TCGA-17-Z015
LUAD
TCGA
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.1944
p.G81C
TCGA-17-Z018
LUAD
TCGA
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.0556
p.R101H
TCGA-32-2616
GBM
TCGA
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.2222
p.R101H
SIDM01424
B-Lymphoblastic Leukemia
GDSC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.2222
p.E88K
TCGA-55-A4DF
LUAD
TCGA
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.25
p.R96W
TCGA-B5-A0K7
UCEC
TCGA
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.8634
p.R97C
TCGA-B5-A11N
UCEC
TCGA
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.8301
p.R97C
TCGA-B6-A0IJ
BRCA
TCGA
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.8301
p.R97C
SIDM00217
Colorectal Carcinoma
GDSC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.8301
p.R97C
SNU-1040
large_intestine
COSMIC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.8301
p.A85V
TCGA-B8-5551
KIRC
TCGA
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.1667
p.S90A
TCGA-VQ-A8PX
STAD
TCGA
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.3056
p.E102K
DO218976
BLCA
ICGC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.1944
p.R85C
DO2813
BRCA
ICGC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.1667
p.R85C
DO41458
UCEC
ICGC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.1667
p.R85C
ACH-000999
Colon/Colorectal Cancer
CCLE
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.1667
p.R85C
SNU-1040
large_intestine
COSMIC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.1667
p.R106Q
DO223732
CESC
ICGC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.0833
p.R85H
DO233156
GACA
ICGC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.1667
p.R89H
DO13462
GBM
ICGC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.2778
p.R89H
ACH-000782
Leukemia
CCLE
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.2778
p.R89H
ACH-001735
Leukemia
CCLE
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.2778
p.R106W
DO47867
STAD
ICGC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.0833
p.K107N
DO229253
THCA
ICGC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.1667
p.R84W
DO41295
UCEC
ICGC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.1389
p.A83T
SIDM01016
T-Lymphoblastic Leukemia
GDSC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.1111
p.A83T
Jurkat
haematopoietic_and_lymphoid_tissue
COSMIC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.1111
p.K94T
SIDM00901
Endometrial Carcinoma
GDSC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.7306
p.K94T
AN3-CA
endometrium
COSMIC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.7306
p.K82T
AN3-CA
endometrium
COSMIC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.1944
p.R81C
SNU-1040
large_intestine
COSMIC
RGPMYDD
LIG_APCC_ABBAyCdc20_2
0.0556
Drug responses associated with MECP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RGPMYDD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P51608
Methyl-CpG-binding protein 2
LIG_APCC_ABBAyCdc20_2
91:97
RGPMYDD
APC,CDC20,FZR1
0.9274
More...