DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
RKNLFAE
Uniprot ID:
Q6KF10
Source protein:
Growth/differentiation factor 6
Source gene:
GDF6
Class:
LIG_APCC_ABBAyCdc20_2
Location:
286:292
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6456
ASA_SCORE:
96.4143
COIL:
0.3909
CONS_SCORE:
0.5418
DSS_SCORE:
0.399
HELIX:
0.5931
FCONS_SCORE:
1.1243
RIG_SCORE:
0.808
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G298C
TCGA-77-8144
LUSC
TCGA
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.1667
p.G298C
DO26949
LUSC
ICGC
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.1667
p.R286H
TCGA-HU-A4GU
STAD
TCGA
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.8244
p.R286H
DO47849
STAD
ICGC
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.8244
p.R286H
SIDM01007
T-Lymphoblastic Leukemia
GDSC
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.8244
p.R286H
ACH-002256
Leukemia
CCLE
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.8244
p.R286H
KARPAS-45
haematopoietic_and_lymphoid_tissue
COSMIC
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.8244
p.A276V
DO37424
SKCM
ICGC
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.0556
p.L289P
SIDM00529
Breast Carcinoma
GDSC
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.7582
p.T282A
SIDM00282
Colorectal Carcinoma
GDSC
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.2222
p.T282A
ACH-000998
Colon/Colorectal Cancer
CCLE
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.2222
p.T282A
CW-2
large_intestine
COSMIC
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.2222
p.E295D
ACH-000679
Esophageal Cancer
CCLE
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.25
p.R294H
ACH-000939
Sarcoma
CCLE
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.2778
p.R294L
ACH-000945
Lung Cancer
CCLE
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.2778
p.R286L
ACH-000945
Lung Cancer
CCLE
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.8428
p.E295K
ACH-000982
Colon/Colorectal Cancer
CCLE
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.25
p.E295K
ACH-001345
Colon/Colorectal Cancer
CCLE
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.25
p.Q285H
ACH-001399
Colon/Colorectal Cancer
CCLE
RKNLFAE
LIG_APCC_ABBAyCdc20_2
0.3056
Drug responses associated with GDF6 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RKNLFAE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q6KF10
Growth/differentiation factor 6
LIG_APCC_ABBAyCdc20_2
286:292
RKNLFAE
APC,CDC20,FZR1
0.6456
More...