DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
RNDYTPDK
Uniprot ID:
Q96QT4
Source protein:
Transient receptor potential cation channel subfamily M member 7
Source gene:
TRPM7
Class:
DEG_SCF_SKP2-CKS1_1
Location:
1826:1833
E3 ligase:
SKP2,CSK1
DEGRON score:
0.8737
ASA_SCORE:
80.0125
COIL:
0.731
CONS_SCORE:
0.1829
DSS_SCORE:
0.4685
HELIX:
0.2255
FCONS_SCORE:
0.7106
RIG_SCORE:
0.753
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T1830M
TCGA-A5-A0G2
UCEC
TCGA
RNDYTPDK
DEG_SCF_SKP2-CKS1_1
0.8534
p.T1830M
TCGA-VQ-A8PT
STAD
TCGA
RNDYTPDK
DEG_SCF_SKP2-CKS1_1
0.8534
p.D1839Y
TCGA-EE-A17Z
SKCM
TCGA
RNDYTPDK
DEG_SCF_SKP2-CKS1_1
0.1667
p.P1837H
TCGA-EE-A181
SKCM
TCGA
RNDYTPDK
DEG_SCF_SKP2-CKS1_1
0.2222
p.D1831N
DO222744
ESCA
ICGC
RNDYTPDK
DEG_SCF_SKP2-CKS1_1
0.6932
p.P1840T
DO229019
LICA
ICGC
RNDYTPDK
DEG_SCF_SKP2-CKS1_1
0.1389
p.P1836S
DO222546
MELA
ICGC
RNDYTPDK
DEG_SCF_SKP2-CKS1_1
0.25
p.P1836H
DO37444
SKCM
ICGC
RNDYTPDK
DEG_SCF_SKP2-CKS1_1
0.25
p.D1838Y
DO37921
SKCM
ICGC
RNDYTPDK
DEG_SCF_SKP2-CKS1_1
0.1944
p.T1829M
DO51776
STAD
ICGC
RNDYTPDK
DEG_SCF_SKP2-CKS1_1
0.7423
p.T1829M
DO41235
UCEC
ICGC
RNDYTPDK
DEG_SCF_SKP2-CKS1_1
0.7423
Drug responses associated with TRPM7 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RNDYTPDK
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q96QT4
Transient receptor potential cation channel subfamily M member 7
DEG_SCF_SKP2-CKS1_1
1826:1833
RNDYTPDK
SKP2,CSK1
0.8737
More...