DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
RRDGTPTK
Uniprot ID:
Q6ZVC0
Source protein:
Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 1
Source gene:
NYAP1
Class:
DEG_SCF_SKP2-CKS1_1
Location:
310:317
E3 ligase:
SKP2,CSK1
DEGRON score:
0.7452
ASA_SCORE:
112.2125
COIL:
0.9573
CONS_SCORE:
0.5977
DSS_SCORE:
0.7989
HELIX:
0.0176
FCONS_SCORE:
0.8454
RIG_SCORE:
0.5291
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E322Q
TCGA-77-7141
LUSC
TCGA
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.1944
p.S305L
TCGA-BF-AAP2
SKCM
TCGA
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.1944
p.S305L
DO219466
SKCM
ICGC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.1944
p.K317N
TCGA-CD-8527
STAD
TCGA
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.6918
p.R301H
TCGA-CV-A45O
HNSC
TCGA
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.0833
p.R301H
SIDM00099
Mesothelioma
GDSC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.0833
p.R301H
ACH-002128
Lung Cancer
CCLE
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.0833
p.R301H
H2722
pleura
COSMIC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.0833
p.G313R
TCGA-D3-A8GL
SKCM
TCGA
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.6457
p.P320S
TCGA-EE-A2MJ
SKCM
TCGA
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.25
p.P320S
TCGA-FW-A3R5
SKCM
TCGA
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.25
p.P320S
SIDM00039
Ovarian Carcinoma
GDSC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.25
p.P320S
ACH-001569
Skin Cancer
CCLE
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.25
p.P320L
TCGA-EE-A3AF
SKCM
TCGA
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.25
p.P320L
DO37911
SKCM
ICGC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.25
p.T316A
TCGA-ER-A2ND
SKCM
TCGA
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.6028
p.T316A
DO47449
SKCM
ICGC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.6028
p.C321Y
TCGA-FI-A2D5
UCEC
TCGA
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.2222
p.C321Y
DO41331
UCEC
ICGC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.2222
p.R310W
TCGA-FP-A4BE
STAD
TCGA
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.7523
p.R310W
DO48016
STAD
ICGC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.7523
p.R323W
DO7810
COAD
ICGC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.1667
p.R323W
OCUB-M
breast
COSMIC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.1667
p.T325M
DO11962
GBM
ICGC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.1111
p.KE307KK
DO222402
MELA
ICGC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0
p.E322K
DO37406
SKCM
ICGC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.1944
p.L303I
DO47712
SKCM
ICGC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.1389
p.E308K
DO47419
SKCM
ICGC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.2778
p.E308K
DO51259
SKCM
ICGC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.2778
p.R321Q
DO47419
SKCM
ICGC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.2222
p.D312N
SIDM00562
Breast Carcinoma
GDSC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.6932
p.D312N
ACH-002163
Breast Cancer
CCLE
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.6932
p.D312N
MRK-nu-1
breast
COSMIC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.6932
p.R302H
SIDM01770
Gastric Carcinoma
GDSC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.1111
p.R302H
ACH-000908
Gastric Cancer
CCLE
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.1111
p.P324S
SIDM00011
Melanoma
GDSC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.1389
p.P324S
ACH-000477
Skin Cancer
CCLE
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.1389
p.S306F
KM12
large_intestine
COSMIC
RRDGTPTK
DEG_SCF_SKP2-CKS1_1
0.2222
Drug responses associated with NYAP1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RRDGTPTK
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q6ZVC0
Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 1
DEG_SCF_SKP2-CKS1_1
310:317
RRDGTPTK
SKP2,CSK1
0.7452
More...