DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
RRRRLGSVM
Uniprot ID:
Q9P2H5
Source protein:
Ubiquitin carboxyl-terminal hydrolase 35
Source gene:
USP35
Class:
DEG_APCC_DBOX_1
Location:
607:615
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5133
ASA_SCORE:
101.4222
COIL:
0.8027
CONS_SCORE:
0.3934
DSS_SCORE:
0.5028
HELIX:
0.1049
FCONS_SCORE:
0.9128
RIG_SCORE:
0.6965
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A599T
TCGA-19-5956
GBM
TCGA
RRRRLGSVM
DEG_APCC_DBOX_1
0.1111
p.A599T
TCGA-IB-7651
PAAD
TCGA
RRRRLGSVM
DEG_APCC_DBOX_1
0.1111
p.C606Y
TCGA-28-5216
GBM
TCGA
RRRRLGSVM
DEG_APCC_DBOX_1
0.3056
p.R610H
TCGA-A5-A0G2
UCEC
TCGA
RRRRLGSVM
DEG_APCC_DBOX_1
0.7133
p.R610H
TCGA-AZ-4315
COAD
TCGA
RRRRLGSVM
DEG_APCC_DBOX_1
0.7133
p.A623T
TCGA-AA-3663
COAD
TCGA
RRRRLGSVM
DEG_APCC_DBOX_1
0.1111
p.R616C
TCGA-AA-3947
COAD
TCGA
RRRRLGSVM
DEG_APCC_DBOX_1
0.3056
p.D620G
TCGA-AX-A2HC
UCEC
TCGA
RRRRLGSVM
DEG_APCC_DBOX_1
0.1944
p.R605C
TCGA-AZ-6601
COAD
TCGA
RRRRLGSVM
DEG_APCC_DBOX_1
0.2778
p.R605C
TCGA-OR-A5LA
ACC
TCGA
RRRRLGSVM
DEG_APCC_DBOX_1
0.2778
p.R616H
TCGA-B5-A3FC
UCEC
TCGA
RRRRLGSVM
DEG_APCC_DBOX_1
0.3056
p.R616H
SIDM01314
Colorectal Carcinoma
GDSC
RRRRLGSVM
DEG_APCC_DBOX_1
0.3056
p.R616H
SIDM01146
Gastric Carcinoma
GDSC
RRRRLGSVM
DEG_APCC_DBOX_1
0.3056
p.R616H
ACH-000932
Gastric Cancer
CCLE
RRRRLGSVM
DEG_APCC_DBOX_1
0.3056
p.R616H
NCI-SNU-1
stomach
COSMIC
RRRRLGSVM
DEG_APCC_DBOX_1
0.3056
p.I621T
TCGA-BR-8361
STAD
TCGA
RRRRLGSVM
DEG_APCC_DBOX_1
0.1667
p.I621T
TCGA-HU-A4GQ
STAD
TCGA
RRRRLGSVM
DEG_APCC_DBOX_1
0.1667
p.L598V
TCGA-CV-6961
HNSC
TCGA
RRRRLGSVM
DEG_APCC_DBOX_1
0.0833
p.R609H
TCGA-EO-A22U
UCEC
TCGA
RRRRLGSVM
DEG_APCC_DBOX_1
0.7133
p.F599V
DO7810
COAD
ICGC
RRRRLGSVM
DEG_APCC_DBOX_1
0.1111
p.V603I
DO46657
PAAD
ICGC
RRRRLGSVM
DEG_APCC_DBOX_1
0.2222
p.F599L
DO51343
PRAD
ICGC
RRRRLGSVM
DEG_APCC_DBOX_1
0.1111
p.S597T
SIDM00578
Neuroblastoma
GDSC
RRRRLGSVM
DEG_APCC_DBOX_1
0.0556
p.S597T
SIDM00394
Cervical Carcinoma
GDSC
RRRRLGSVM
DEG_APCC_DBOX_1
0.0556
p.S597T
SIDM00487
Colorectal Carcinoma
GDSC
RRRRLGSVM
DEG_APCC_DBOX_1
0.0556
p.S597T
SIDM00325
Esophageal Squamous Cell Carcinoma
GDSC
RRRRLGSVM
DEG_APCC_DBOX_1
0.0556
p.S597T
SIDM01217
Other Blood Cancers
GDSC
RRRRLGSVM
DEG_APCC_DBOX_1
0.0556
p.S597T
SIDM01449
Pancreatic Carcinoma
GDSC
RRRRLGSVM
DEG_APCC_DBOX_1
0.0556
p.S597T
CCK-81
large_intestine
COSMIC
RRRRLGSVM
DEG_APCC_DBOX_1
0.0556
p.S597T
SISO
cervix
COSMIC
RRRRLGSVM
DEG_APCC_DBOX_1
0.0556
p.S597T
MY-M12
haematopoietic_and_lymphoid_tissue
COSMIC
RRRRLGSVM
DEG_APCC_DBOX_1
0.0556
p.S597T
TE-9
oesophagus
COSMIC
RRRRLGSVM
DEG_APCC_DBOX_1
0.0556
p.S597T
NB1
autonomic_ganglia
COSMIC
RRRRLGSVM
DEG_APCC_DBOX_1
0.0556
p.R607C
SIDM00419
Ewing's Sarcoma
GDSC
RRRRLGSVM
DEG_APCC_DBOX_1
0.719
p.R607C
TC-71
bone
COSMIC
RRRRLGSVM
DEG_APCC_DBOX_1
0.719
p.R608C
SIDM01071
Small Cell Lung Carcinoma
GDSC
RRRRLGSVM
DEG_APCC_DBOX_1
0.8301
p.A607D
SW48
large_intestine
COSMIC
RRRRLGSVM
DEG_APCC_DBOX_1
0.7793
p.A602D
EBC-1
lung
COSMIC
RRRRLGSVM
DEG_APCC_DBOX_1
0.1944
p.E616D
H2804
pleura
COSMIC
RRRRLGSVM
DEG_APCC_DBOX_1
0.3056
p.A606P
DMS-273
lung
COSMIC
RRRRLGSVM
DEG_APCC_DBOX_1
0.3056
Drug responses associated with USP35 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RRRRLGSVM
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9P2H5
Ubiquitin carboxyl-terminal hydrolase 35
DEG_APCC_DBOX_1
607:615
RRRRLGSVM
APC,CDC20,FZR1
0.5133
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