DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
RRSVLQRIM
Uniprot ID:
Q9NVN8
Source protein:
Guanine nucleotide-binding protein-like 3-like protein
Source gene:
GNL3L
Class:
DEG_APCC_DBOX_1
Location:
522:530
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8358
ASA_SCORE:
87.9444
COIL:
0.3029
CONS_SCORE:
0.2339
DSS_SCORE:
0.4086
HELIX:
0.6707
FCONS_SCORE:
0.9775
RIG_SCORE:
0.7996
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S519L
TCGA-2F-A9KR
BLCA
TCGA
RRSVLQRIM
DEG_APCC_DBOX_1
0.6944
p.S519L
DO51862
BLCA
ICGC
RRSVLQRIM
DEG_APCC_DBOX_1
0.6944
p.T532M
TCGA-2W-A8YY
CESC
TCGA
RRSVLQRIM
DEG_APCC_DBOX_1
0.2778
p.T532M
TCGA-BR-8382
STAD
TCGA
RRSVLQRIM
DEG_APCC_DBOX_1
0.2778
p.T532M
TCGA-GM-A2DC
BRCA
TCGA
RRSVLQRIM
DEG_APCC_DBOX_1
0.2778
p.T532M
DO1866
BRCA
ICGC
RRSVLQRIM
DEG_APCC_DBOX_1
0.2778
p.T532M
DO223732
CESC
ICGC
RRSVLQRIM
DEG_APCC_DBOX_1
0.2778
p.T532M
DO231610
LINC
ICGC
RRSVLQRIM
DEG_APCC_DBOX_1
0.2778
p.T532M
DO47925
STAD
ICGC
RRSVLQRIM
DEG_APCC_DBOX_1
0.2778
p.R522H
TCGA-AP-A0LM
UCEC
TCGA
RRSVLQRIM
DEG_APCC_DBOX_1
0.7133
p.R522H
DO43306
UCEC
ICGC
RRSVLQRIM
DEG_APCC_DBOX_1
0.7133
p.R522H
SIDM00217
Colorectal Carcinoma
GDSC
RRSVLQRIM
DEG_APCC_DBOX_1
0.7133
p.R522H
ACH-000999
Colon/Colorectal Cancer
CCLE
RRSVLQRIM
DEG_APCC_DBOX_1
0.7133
p.R522H
SNU-1040
large_intestine
COSMIC
RRSVLQRIM
DEG_APCC_DBOX_1
0.7133
p.S513I
TCGA-B5-A3FA
UCEC
TCGA
RRSVLQRIM
DEG_APCC_DBOX_1
0.5278
p.S513I
DO52402
UCEC
ICGC
RRSVLQRIM
DEG_APCC_DBOX_1
0.5278
p.D521N
TCGA-B5-A3FC
UCEC
TCGA
RRSVLQRIM
DEG_APCC_DBOX_1
0.3056
p.D521N
DO41871
UCEC
ICGC
RRSVLQRIM
DEG_APCC_DBOX_1
0.3056
p.D521N
SIDM00007
Other Solid Cancers
GDSC
RRSVLQRIM
DEG_APCC_DBOX_1
0.3056
p.D521N
ACH-001550
Skin Cancer
CCLE
RRSVLQRIM
DEG_APCC_DBOX_1
0.3056
p.D521N
MCC13
skin
COSMIC
RRSVLQRIM
DEG_APCC_DBOX_1
0.3056
p.M514I
TCGA-FS-A1ZM
SKCM
TCGA
RRSVLQRIM
DEG_APCC_DBOX_1
0.1111
p.M514I
DO37731
SKCM
ICGC
RRSVLQRIM
DEG_APCC_DBOX_1
0.1111
p.P534L
TCGA-GN-A268
SKCM
TCGA
RRSVLQRIM
DEG_APCC_DBOX_1
0.2222
p.P534L
DO37477
SKCM
ICGC
RRSVLQRIM
DEG_APCC_DBOX_1
0.2222
p.R522C
DO222864
COCA
ICGC
RRSVLQRIM
DEG_APCC_DBOX_1
0.719
p.R522C
DO52365
LUSC
ICGC
RRSVLQRIM
DEG_APCC_DBOX_1
0.719
p.R522C
DO35118
PACA
ICGC
RRSVLQRIM
DEG_APCC_DBOX_1
0.719
p.L526P
SIDM00596
Endometrial Carcinoma
GDSC
RRSVLQRIM
DEG_APCC_DBOX_1
0.7582
p.L526P
ACH-000941
Endometrial/Uterine Cancer
CCLE
RRSVLQRIM
DEG_APCC_DBOX_1
0.7582
p.L526P
ACH-000954
Endometrial/Uterine Cancer
CCLE
RRSVLQRIM
DEG_APCC_DBOX_1
0.7582
p.L526P
ACH-001517
Endometrial/Uterine Cancer
CCLE
RRSVLQRIM
DEG_APCC_DBOX_1
0.7582
p.L526P
HEC-1
endometrium
COSMIC
RRSVLQRIM
DEG_APCC_DBOX_1
0.7582
p.V525A
ACH-001521
Skin Cancer
CCLE
RRSVLQRIM
DEG_APCC_DBOX_1
0.5825
Drug responses associated with GNL3L mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RRSVLQRIM
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NVN8
Guanine nucleotide-binding protein-like 3-like protein
DEG_APCC_DBOX_1
522:530
RRSVLQRIM
APC,CDC20,FZR1
0.8358
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