DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
RRVFLGEVI
Uniprot ID:
Q4VX76
Source protein:
Synaptotagmin-like protein 3
Source gene:
SYTL3
Class:
DEG_APCC_DBOX_1
Location:
404:412
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7764
ASA_SCORE:
60.1333
COIL:
0.358
CONS_SCORE:
0.7144
DSS_SCORE:
0.0148
HELIX:
0.0327
FCONS_SCORE:
1.3076
RIG_SCORE:
0.9327
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R404Q
TCGA-BR-4201
STAD
TCGA
RRVFLGEVI
DEG_APCC_DBOX_1
0.6218
p.R404Q
SIDM00309
Mesothelioma
GDSC
RRVFLGEVI
DEG_APCC_DBOX_1
0.6218
p.A403T
TCGA-D1-A103
UCEC
TCGA
RRVFLGEVI
DEG_APCC_DBOX_1
0.3056
p.G409E
TCGA-DX-A7EM
SARC
TCGA
RRVFLGEVI
DEG_APCC_DBOX_1
0.6087
p.L408F
TCGA-PQ-A6FN
BLCA
TCGA
RRVFLGEVI
DEG_APCC_DBOX_1
0.6981
p.Q407E
DO219064
BLCA
ICGC
RRVFLGEVI
DEG_APCC_DBOX_1
0.6744
p.R396K
DO456
BLCA
ICGC
RRVFLGEVI
DEG_APCC_DBOX_1
0.1111
p.G412C
DO229036
LICA
ICGC
RRVFLGEVI
DEG_APCC_DBOX_1
0.76
p.K422N
DO49073
UCEC
ICGC
RRVFLGEVI
DEG_APCC_DBOX_1
0.0556
p.K422N
DO41211
UCEC
ICGC
RRVFLGEVI
DEG_APCC_DBOX_1
0.0556
p.K422N
PANC-08-13
pancreas
COSMIC
RRVFLGEVI
DEG_APCC_DBOX_1
0.0556
p.R404W
SIDM00798
Rhabdomyosarcoma
GDSC
RRVFLGEVI
DEG_APCC_DBOX_1
0.7523
p.R404W
ACH-000201
Rhabdoid
CCLE
RRVFLGEVI
DEG_APCC_DBOX_1
0.7523
p.R404W
ACH-001212
Rhabdoid
CCLE
RRVFLGEVI
DEG_APCC_DBOX_1
0.7523
p.R404W
A204
soft_tissue
COSMIC
RRVFLGEVI
DEG_APCC_DBOX_1
0.7523
p.T401M
SIDM01463
Endometrial Carcinoma
GDSC
RRVFLGEVI
DEG_APCC_DBOX_1
0.6944
p.A403D
ACH-000851
Lung Cancer
CCLE
RRVFLGEVI
DEG_APCC_DBOX_1
0.3056
Drug responses associated with SYTL3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RRVFLGEVI
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q4VX76
Synaptotagmin-like protein 3
DEG_APCC_DBOX_1
404:412
RRVFLGEVI
APC,CDC20,FZR1
0.7764
More...