DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
RTIIFCE
Uniprot ID:
Q9NR30
Source protein:
Nucleolar RNA helicase 2
Source gene:
DDX21
Class:
LIG_APCC_ABBAyCdc20_2
Location:
440:446
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5208
ASA_SCORE:
21.2
COIL:
0.2809
CONS_SCORE:
0.6072
DSS_SCORE:
0.2596
HELIX:
0.0124
FCONS_SCORE:
1.4436
RIG_SCORE:
0.8872
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R440H
TCGA-AX-A0J1
UCEC
TCGA
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.8244
p.R440H
DO41199
UCEC
ICGC
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.8244
p.R440C
TCGA-BR-8078
STAD
TCGA
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.8301
p.R440C
DO38288
STAD
ICGC
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.8301
p.Q438E
TCGA-XF-AAN0
BLCA
TCGA
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.2778
p.Q438E
DO51941
BLCA
ICGC
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.2778
p.A451S
DO229028
LICA
ICGC
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.1944
p.Y434H
SIDM00284
Melanoma
GDSC
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.1667
p.Y434H
SIDM01059
Melanoma
GDSC
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.1667
p.I431V
SIDM01045
Endometrial Carcinoma
GDSC
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.0833
p.I431V
ACH-000978
Endometrial/Uterine Cancer
CCLE
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.0833
p.I431V
EN
endometrium
COSMIC
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.0833
p.E446Q
SIDM00898
Breast Carcinoma
GDSC
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.6744
p.E446Q
ACH-000248
Breast Cancer
CCLE
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.6744
p.E446Q
AU565
breast
COSMIC
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.6744
p.E453K
SIDM00150
Colorectal Carcinoma
GDSC
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.1389
p.E453K
ACH-000969
Colon/Colorectal Cancer
CCLE
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.1389
p.E453K
KM12
large_intestine
COSMIC
RTIIFCE
LIG_APCC_ABBAyCdc20_2
0.1389
Drug responses associated with DDX21 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RTIIFCE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NR30
Nucleolar RNA helicase 2
LIG_APCC_ABBAyCdc20_2
440:446
RTIIFCE
APC,CDC20,FZR1
0.5208
More...