DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
RTNVYSD
Uniprot ID:
Q86YS3
Source protein:
Rab11 family-interacting protein 4
Source gene:
RAB11FIP4
Class:
LIG_APCC_ABBAyCdc20_2
Location:
239:245
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9372
ASA_SCORE:
86.8
COIL:
0.7874
CONS_SCORE:
0.296
DSS_SCORE:
0.5953
HELIX:
0.1246
FCONS_SCORE:
0.975
RIG_SCORE:
0.7302
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D245H
TCGA-D3-A3MR
SKCM
TCGA
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.7688
p.D245H
DO47256
SKCM
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.7688
p.Y243H
DO52611
BOCA
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.6118
p.V242I
DO233652
GACA
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.5965
p.T238I
TCGA-GD-A6C6
BLCA
TCGA
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.3056
p.T238I
DO48504
BLCA
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.3056
p.S249L
TCGA-AG-4008
READ
TCGA
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.2222
p.S249L
DO36386
READ
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.2222
p.D235N
TCGA-VS-A952
CESC
TCGA
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.2222
p.D235N
DO51636
CESC
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.2222
p.D235N
DO51480
PACA
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.2222
p.P234T
TCGA-OR-A5JA
ACC
TCGA
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.1944
p.S230R
TCGA-25-1320
OV
TCGA
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.0833
p.S230R
DO31510
OV
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.0833
p.A254V
TCGA-DU-6392
LGG
TCGA
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.0833
p.A254V
DO22237
LGG
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.0833
p.D229H
CPC-N
lung
COSMIC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.0556
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Drug responses associated with RAB11FIP4 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of RTNVYSD
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q86YS3
Rab11 family-interacting protein 4
LIG_APCC_ABBAyCdc20_2
239:245
RTNVYSD
APC,CDC20,FZR1
0.9372
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