DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
RTNVYSD
Uniprot ID:
Q86YS3
Source protein:
Rab11 family-interacting protein 4
Source gene:
RAB11FIP4
Class:
LIG_APCC_ABBAyCdc20_2
Location:
239:245
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9372
ASA_SCORE:
86.8
COIL:
0.7874
CONS_SCORE:
0.296
DSS_SCORE:
0.5953
HELIX:
0.1246
FCONS_SCORE:
0.975
RIG_SCORE:
0.7302
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S230R
TCGA-25-1320
OV
TCGA
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.0833
p.S230R
DO31510
OV
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.0833
p.S249L
TCGA-AG-4008
READ
TCGA
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.2222
p.S249L
DO36386
READ
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.2222
p.D245H
TCGA-D3-A3MR
SKCM
TCGA
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.7688
p.D245H
DO47256
SKCM
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.7688
p.A254V
TCGA-DU-6392
LGG
TCGA
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.0833
p.A254V
DO22237
LGG
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.0833
p.T238I
TCGA-GD-A6C6
BLCA
TCGA
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.3056
p.T238I
DO48504
BLCA
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.3056
p.P234T
TCGA-OR-A5JA
ACC
TCGA
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.1944
p.D235N
TCGA-VS-A952
CESC
TCGA
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.2222
p.D235N
DO51636
CESC
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.2222
p.D235N
DO51480
PACA
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.2222
p.Y243H
DO52611
BOCA
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.6118
p.V242I
DO233652
GACA
ICGC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.5965
p.D229H
CPC-N
lung
COSMIC
RTNVYSD
LIG_APCC_ABBAyCdc20_2
0.0556
Drug responses associated with RAB11FIP4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RTNVYSD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q86YS3
Rab11 family-interacting protein 4
LIG_APCC_ABBAyCdc20_2
239:245
RTNVYSD
APC,CDC20,FZR1
0.9372
More...