DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
RYRLYLD
Uniprot ID:
Q9HD26
Source protein:
Golgi-associated PDZ and coiled-coil motif-containing protein
Source gene:
GOPC
Class:
LIG_APCC_ABBAyCdc20_2
Location:
390:396
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5456
ASA_SCORE:
84.8714
COIL:
0.3684
CONS_SCORE:
0.5059
DSS_SCORE:
0.4726
HELIX:
0.133
FCONS_SCORE:
1.0767
RIG_SCORE:
0.8408
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G402D
TCGA-A5-A0G2
UCEC
TCGA
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.1667
p.V381I
TCGA-A6-2681
COAD
TCGA
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.0833
p.V381I
SIDM02059
Colorectal Carcinoma
GDSC
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.0833
p.V381I
SIDM01178
Other Solid Cancers
GDSC
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.0833
p.V381I
SIDM00168
Head and Neck Carcinoma
GDSC
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.0833
p.V381I
SW962
vulva
COSMIC
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.0833
p.R392S
TCGA-BF-A1Q0
SKCM
TCGA
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.6316
p.G405C
TCGA-D3-A2JO
SKCM
TCGA
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.0833
p.G405C
DO47619
SKCM
ICGC
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.0833
p.D385N
TCGA-XF-A9T0
BLCA
TCGA
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.1944
p.D402E
DO229035
LICA
ICGC
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.1667
p.G393S
DO222413
MELA
ICGC
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.6993
p.G380E
DO232206
RT
ICGC
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.0556
p.R384S
DO47374
SKCM
ICGC
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.1667
p.G394D
DO41235
UCEC
ICGC
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.7198
p.R390C
SIDM00193
Colorectal Carcinoma
GDSC
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.8301
p.R390C
SNU-81
large_intestine
COSMIC
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.8301
p.R392H
SIDM01027
Esophageal Squamous Cell Carcinoma
GDSC
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.7133
p.R384C
ACH-000887
Brain Cancer
CCLE
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.1667
p.S404N
ACH-000966
Ovarian Cancer
CCLE
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.1111
p.S404N
IGROV-1
ovary
COSMIC
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.1111
p.R382C
ACH-000991
Colon/Colorectal Cancer
CCLE
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.1111
p.R382C
SNU-81
large_intestine
COSMIC
RYRLYLD
LIG_APCC_ABBAyCdc20_2
0.1111
Drug responses associated with GOPC mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RYRLYLD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9HD26
Golgi-associated PDZ and coiled-coil motif-containing protein
LIG_APCC_ABBAyCdc20_2
390:396
RYRLYLD
APC,CDC20,FZR1
0.5456
More...