DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SEDNRVPSP
Uniprot ID:
P50851
Source protein:
Lipopolysaccharide-responsive and beige-like anchor protein
Source gene:
LRBA
Class:
DEG_COP1_1
Location:
3:11
E3 ligase:
COP1
DEGRON score:
0.9909
ASA_SCORE:
109.0333
COIL:
0.9663
CONS_SCORE:
0.2531
DSS_SCORE:
0.9598
HELIX:
0.0176
FCONS_SCORE:
0.9748
RIG_SCORE:
0.577
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A2V
DO229234
THCA
ICGC
SEDNRVPSP
DEG_COP1_1
0.3056
p.G18R
SIDM00590
Oral Cavity Carcinoma
GDSC
SEDNRVPSP
DEG_COP1_1
0.1389
p.G18R
SIDM00585
Hepatocellular Carcinoma
GDSC
SEDNRVPSP
DEG_COP1_1
0.1389
p.G18R
SIDM00375
Head and Neck Carcinoma
GDSC
SEDNRVPSP
DEG_COP1_1
0.1389
p.G18R
SIDM00927
Small Cell Lung Carcinoma
GDSC
SEDNRVPSP
DEG_COP1_1
0.1389
p.G18R
SIDM00549
B-Lymphoblastic Leukemia
GDSC
SEDNRVPSP
DEG_COP1_1
0.1389
p.G18R
SIDM00380
Acute Myeloid Leukemia
GDSC
SEDNRVPSP
DEG_COP1_1
0.1389
p.G18R
SIDM01018
Hodgkin's Lymphoma
GDSC
SEDNRVPSP
DEG_COP1_1
0.1389
p.G18R
SIDM01660
Kidney Carcinoma
GDSC
SEDNRVPSP
DEG_COP1_1
0.1389
p.S3N
NCI-H2122
lung
COSMIC
SEDNRVPSP
DEG_COP1_1
0.818
Drug responses associated with LRBA mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SEDNRVPSP
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P50851
Lipopolysaccharide-responsive and beige-like anchor protein
DEG_COP1_1
3:11
SEDNRVPSP
COP1
0.9909
More...