DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
SESSHQVVPSL
Uniprot ID:
P23471
Source protein:
Receptor-type tyrosine-protein phosphatase zeta
Source gene:
PTPRZ1
Class:
DEG_COP1_1
Location:
1276:1286
E3 ligase:
COP1
DEGRON score:
0.6492
ASA_SCORE:
52.6273
COIL:
0.4738
CONS_SCORE:
0.535
DSS_SCORE:
0.3456
HELIX:
0.0553
FCONS_SCORE:
1.0712
RIG_SCORE:
0.7211
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K1275T
TCGA-BS-A0UF
UCEC
TCGA
SESSHQVVPSL
DEG_COP1_1
0.3056
p.K1275T
DO41488
UCEC
ICGC
SESSHQVVPSL
DEG_COP1_1
0.3056
p.E1267V
TCGA-DD-AACX
LIHC
TCGA
SESSHQVVPSL
DEG_COP1_1
0.0833
p.E1267V
DO52215
LIHC
ICGC
SESSHQVVPSL
DEG_COP1_1
0.0833
p.S1279F
TCGA-FR-A3YN
SKCM
TCGA
SESSHQVVPSL
DEG_COP1_1
0.7982
p.S1279F
DO38111
SKCM
ICGC
SESSHQVVPSL
DEG_COP1_1
0.7982
p.S1293C
DO4080
BRCA
ICGC
SESSHQVVPSL
DEG_COP1_1
0.1389
p.E1287D
DO8184
COAD
ICGC
SESSHQVVPSL
DEG_COP1_1
0.3056
p.W1268C
DO229026
LICA
ICGC
SESSHQVVPSL
DEG_COP1_1
0.2222
p.W1268C
DO229034
LICA
ICGC
SESSHQVVPSL
DEG_COP1_1
0.2222
p.L1284R
DO52679
MALY
ICGC
SESSHQVVPSL
DEG_COP1_1
0.8428
p.E1273K
DO222557
MELA
ICGC
SESSHQVVPSL
DEG_COP1_1
0.25
p.L1292V
DO51740
STAD
ICGC
SESSHQVVPSL
DEG_COP1_1
0.1667
p.L1273F
SIDM01184
Bladder Carcinoma
GDSC
SESSHQVVPSL
DEG_COP1_1
0.25
p.L1273F
SIDM00976
Melanoma
GDSC
SESSHQVVPSL
DEG_COP1_1
0.25
p.H1280Q
SIDM00114
Non-Small Cell Lung Carcinoma
GDSC
SESSHQVVPSL
DEG_COP1_1
0.647
p.H1280Q
H513
pleura
COSMIC
SESSHQVVPSL
DEG_COP1_1
0.647
p.Y1269F
SIDM01608
Endometrial Carcinoma
GDSC
SESSHQVVPSL
DEG_COP1_1
0.1389
p.N1289S
SIDM01608
Endometrial Carcinoma
GDSC
SESSHQVVPSL
DEG_COP1_1
0.25
p.L1284V
ACH-000308
Ovarian Cancer
CCLE
SESSHQVVPSL
DEG_COP1_1
0.6765
p.L1284V
EFO-21
ovary
COSMIC
SESSHQVVPSL
DEG_COP1_1
0.6765
p.N1276H
ACH-000993
Endometrial/Uterine Cancer
CCLE
SESSHQVVPSL
DEG_COP1_1
0.7423
p.P1269Q
ACH-001021
Liver Cancer
CCLE
SESSHQVVPSL
DEG_COP1_1
0.1389
p.P1269Q
C3A
liver
COSMIC
SESSHQVVPSL
DEG_COP1_1
0.1389
p.V1266A
LNCaP-Clone-FGC
prostate
COSMIC
SESSHQVVPSL
DEG_COP1_1
0.0556
p.K1281T
MIA-PaCa-2
pancreas
COSMIC
SESSHQVVPSL
DEG_COP1_1
0.7306
Drug responses associated with PTPRZ1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SESSHQVVPSL
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P23471
Receptor-type tyrosine-protein phosphatase zeta
DEG_COP1_1
1276:1286
SESSHQVVPSL
COP1
0.6492
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