DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
SKLSLNVPSL
Uniprot ID:
Q8NDH2
Source protein:
Leucine-rich repeat transmembrane protein CCDC168
Source gene:
CCDC168
Class:
DEG_COP1_1
Location:
485:494
E3 ligase:
COP1
DEGRON score:
0.9991
ASA_SCORE:
78.67
COIL:
0.8409
CONS_SCORE:
0.266
DSS_SCORE:
0.5617
HELIX:
0.0776
FCONS_SCORE:
0.7919
RIG_SCORE:
0.713
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E496D
TCGA-EO-A22R
UCEC
TCGA
SKLSLNVPSL
DEG_COP1_1
0.2778
p.E496D
DO42713
UCEC
ICGC
SKLSLNVPSL
DEG_COP1_1
0.2778
p.S478F
DO222762
COCA
ICGC
SKLSLNVPSL
DEG_COP1_1
0.1389
p.S481L
DO222363
MELA
ICGC
SKLSLNVPSL
DEG_COP1_1
0.2222
p.A484T
ACH-000030
Lung Cancer
CCLE
SKLSLNVPSL
DEG_COP1_1
0.3056
p.A484T
ACH-000779
Lung Cancer
CCLE
SKLSLNVPSL
DEG_COP1_1
0.3056
p.K479N
ACH-001401
Adrenal Cancer
CCLE
SKLSLNVPSL
DEG_COP1_1
0.2778
p.R486I
ACH-002046
Endometrial/Uterine Cancer
CCLE
SKLSLNVPSL
DEG_COP1_1
0.8102
Drug responses associated with CCDC168 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKLSLNVPSL
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8NDH2
Leucine-rich repeat transmembrane protein CCDC168
DEG_COP1_1
485:494
SKLSLNVPSL
COP1
0.9991
More...