DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SRFALLQVD
Uniprot ID:
Q5VSY0
Source protein:
G kinase-anchoring protein 1
Source gene:
GKAP1
Class:
DEG_APCC_DBOX_1
Location:
14:22
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9352
ASA_SCORE:
41.2111
COIL:
0.4602
CONS_SCORE:
0.6547
DSS_SCORE:
0.4759
HELIX:
0.0446
FCONS_SCORE:
1.4787
RIG_SCORE:
0.7722
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L18M
SIDM00683
Prostate Carcinoma
GDSC
SRFALLQVD
DEG_APCC_DBOX_1
0.711
p.L18M
ACH-000977
lymph_node
CCLE
SRFALLQVD
DEG_APCC_DBOX_1
0.711
p.L18M
LNCaP-Clone-FGC
prostate
COSMIC
SRFALLQVD
DEG_APCC_DBOX_1
0.711
p.S14F
TCGA-63-5128
LUSC
TCGA
SRFALLQVD
DEG_APCC_DBOX_1
0.6871
p.S14F
DO27255
LUSC
ICGC
SRFALLQVD
DEG_APCC_DBOX_1
0.6871
p.V9L
SIDM01072
Squamous Cell Lung Carcinoma
GDSC
SRFALLQVD
DEG_APCC_DBOX_1
0.6389
p.V9I
ACH-001061
Colon/Colorectal Cancer
CCLE
SRFALLQVD
DEG_APCC_DBOX_1
0.6389
p.A13T
DO230347
COCA
ICGC
SRFALLQVD
DEG_APCC_DBOX_1
0.3056
p.T11N
DO229031
LICA
ICGC
SRFALLQVD
DEG_APCC_DBOX_1
0.25
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Drug responses associated with GKAP1 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of SRFALLQVD
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q5VSY0
G kinase-anchoring protein 1
DEG_APCC_DBOX_1
14:22
SRFALLQVD
APC,CDC20,FZR1
0.9352
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