DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
SRPVLHLLQ
Uniprot ID:
Q96DN2
Source protein:
von Willebrand factor C and EGF domain-containing protein
Source gene:
VWCE
Class:
DEG_APCC_DBOX_1
Location:
792:800
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6228
ASA_SCORE:
83.3667
COIL:
0.6788
CONS_SCORE:
0.4645
DSS_SCORE:
0.4432
HELIX:
0.1413
FCONS_SCORE:
0.9065
RIG_SCORE:
0.8087
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V795M
SIDM00129
Melanoma
GDSC
SRPVLHLLQ
DEG_APCC_DBOX_1
0.6097
p.V795M
ACH-002121
Skin Cancer
CCLE
SRPVLHLLQ
DEG_APCC_DBOX_1
0.6097
p.V795M
G-MEL
skin
COSMIC
SRPVLHLLQ
DEG_APCC_DBOX_1
0.6097
p.T788K
SIDM00762
Non-Small Cell Lung Carcinoma
GDSC
SRPVLHLLQ
DEG_APCC_DBOX_1
0.2222
p.T788K
SIDM00857
Melanoma
GDSC
SRPVLHLLQ
DEG_APCC_DBOX_1
0.2222
p.T788K
SIDM01089
B-Cell Non-Hodgkin's Lymphoma
GDSC
SRPVLHLLQ
DEG_APCC_DBOX_1
0.2222
p.T788K
SIDM01424
B-Lymphoblastic Leukemia
GDSC
SRPVLHLLQ
DEG_APCC_DBOX_1
0.2222
p.P787Q
TCGA-28-5211
GBM
TCGA
SRPVLHLLQ
DEG_APCC_DBOX_1
0.1944
p.P787T
TCGA-66-2795
LUSC
TCGA
SRPVLHLLQ
DEG_APCC_DBOX_1
0.1944
p.P784S
TCGA-VS-A9UI
CESC
TCGA
SRPVLHLLQ
DEG_APCC_DBOX_1
0.1111
p.P784S
DO219734
CESC
ICGC
SRPVLHLLQ
DEG_APCC_DBOX_1
0.1111
p.M808I
SIDM00640
Mesothelioma
GDSC
SRPVLHLLQ
DEG_APCC_DBOX_1
0.1111
p.M808I
ACH-000335
Lung Cancer
CCLE
SRPVLHLLQ
DEG_APCC_DBOX_1
0.1111
p.M808I
MSTO-211H
pleura
COSMIC
SRPVLHLLQ
DEG_APCC_DBOX_1
0.1111
p.S782C
TCGA-AC-A23H
BRCA
TCGA
SRPVLHLLQ
DEG_APCC_DBOX_1
0.0556
p.S782C
DO2401
BRCA
ICGC
SRPVLHLLQ
DEG_APCC_DBOX_1
0.0556
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Drug responses associated with VWCE mutations
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Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of SRPVLHLLQ
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q96DN2
von Willebrand factor C and EGF domain-containing protein
DEG_APCC_DBOX_1
792:800
SRPVLHLLQ
APC,CDC20,FZR1
0.6228
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