DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SSGIEDPVPTL
Uniprot ID:
O75175
Source protein:
CCR4-NOT transcription complex subunit 3
Source gene:
CNOT3
Class:
DEG_COP1_1
Location:
553:563
E3 ligase:
COP1
DEGRON score:
0.9949
ASA_SCORE:
80.0818
COIL:
0.8499
CONS_SCORE:
0.256
DSS_SCORE:
0.4555
HELIX:
0.1088
FCONS_SCORE:
1.1198
RIG_SCORE:
0.6822
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R568Q
TCGA-68-A59J
LUSC
TCGA
SSGIEDPVPTL
DEG_COP1_1
0.1944
p.R568Q
TCGA-AP-A0LM
UCEC
TCGA
SSGIEDPVPTL
DEG_COP1_1
0.1944
p.R568Q
TCGA-AP-A1E0
UCEC
TCGA
SSGIEDPVPTL
DEG_COP1_1
0.1944
p.S554P
TCGA-78-7148
LUAD
TCGA
SSGIEDPVPTL
DEG_COP1_1
0.6752
p.T562M
TCGA-A5-A0G2
UCEC
TCGA
SSGIEDPVPTL
DEG_COP1_1
0.7423
p.T562M
DO41235
UCEC
ICGC
SSGIEDPVPTL
DEG_COP1_1
0.7423
p.R549W
TCGA-AA-A022
COAD
TCGA
SSGIEDPVPTL
DEG_COP1_1
0.2222
p.A547V
TCGA-AX-A0J1
UCEC
TCGA
SSGIEDPVPTL
DEG_COP1_1
0.1667
p.L565P
TCGA-B5-A11Y
UCEC
TCGA
SSGIEDPVPTL
DEG_COP1_1
0.2778
p.I571V
TCGA-BH-A18G
BRCA
TCGA
SSGIEDPVPTL
DEG_COP1_1
0.1111
p.I571V
DO3686
BRCA
ICGC
SSGIEDPVPTL
DEG_COP1_1
0.1111
p.A551V
TCGA-L5-A43J
ESCA
TCGA
SSGIEDPVPTL
DEG_COP1_1
0.2778
p.S549L
DO227709
COCA
ICGC
SSGIEDPVPTL
DEG_COP1_1
0.2222
p.S549L
DO229010
COCA
ICGC
SSGIEDPVPTL
DEG_COP1_1
0.2222
p.S549L
DO229013
COCA
ICGC
SSGIEDPVPTL
DEG_COP1_1
0.2222
p.S549L
DO229005
COCA
ICGC
SSGIEDPVPTL
DEG_COP1_1
0.2222
p.S549L
DO229346
LAML
ICGC
SSGIEDPVPTL
DEG_COP1_1
0.2222
p.S549L
DO231114
LUSC
ICGC
SSGIEDPVPTL
DEG_COP1_1
0.2222
p.S549L
DO27813
MALY
ICGC
SSGIEDPVPTL
DEG_COP1_1
0.2222
p.S552F
DO233631
GACA
ICGC
SSGIEDPVPTL
DEG_COP1_1
0.3056
p.E561D
DO220312
SARC
ICGC
SSGIEDPVPTL
DEG_COP1_1
0.6758
p.P543L
DO43755
UCEC
ICGC
SSGIEDPVPTL
DEG_COP1_1
0.0556
p.P559L
SIDM01188
Pancreatic Carcinoma
GDSC
SSGIEDPVPTL
DEG_COP1_1
0.6471
p.P559L
ACH-000114
Pancreatic Cancer
CCLE
SSGIEDPVPTL
DEG_COP1_1
0.6471
p.P559L
SU8686
pancreas
COSMIC
SSGIEDPVPTL
DEG_COP1_1
0.6471
p.R549Q
SIDM01525
Acute Myeloid Leukemia
GDSC
SSGIEDPVPTL
DEG_COP1_1
0.2222
p.R549Q
ACH-000557
Leukemia
CCLE
SSGIEDPVPTL
DEG_COP1_1
0.2222
p.A550G
Calu-3
lung
COSMIC
SSGIEDPVPTL
DEG_COP1_1
0.25
Drug responses associated with CNOT3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SSGIEDPVPTL
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75175
CCR4-NOT transcription complex subunit 3
DEG_COP1_1
553:563
SSGIEDPVPTL
COP1
0.9949
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