DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SSPNSSPVPSP
Uniprot ID:
Q71F56
Source protein:
Mediator of RNA polymerase II transcription subunit 13-like
Source gene:
MED13L
Class:
DEG_COP1_1
Location:
2049:2059
E3 ligase:
COP1
DEGRON score:
0.9384
ASA_SCORE:
68.8
COIL:
0.9608
CONS_SCORE:
0.3014
DSS_SCORE:
0.6915
HELIX:
0.019
FCONS_SCORE:
1.0235
RIG_SCORE:
0.5166
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S2063F
TCGA-CV-7568
HNSC
TCGA
SSPNSSPVPSP
DEG_COP1_1
0.2222
p.S2063F
DO14160
HNSC
ICGC
SSPNSSPVPSP
DEG_COP1_1
0.2222
p.P2055Q
DO229035
LICA
ICGC
SSPNSSPVPSP
DEG_COP1_1
0.5924
p.T2044S
DO229052
LICA
ICGC
SSPNSSPVPSP
DEG_COP1_1
0.1944
p.G2040S
DO231102
LUSC
ICGC
SSPNSSPVPSP
DEG_COP1_1
0.0833
p.P2062L
DO219878
SKCA
ICGC
SSPNSSPVPSP
DEG_COP1_1
0.25
p.S2049P
ACH-000999
Colon/Colorectal Cancer
CCLE
SSPNSSPVPSP
DEG_COP1_1
0.6752
p.S2049P
SNU-1040
large_intestine
COSMIC
SSPNSSPVPSP
DEG_COP1_1
0.6752
Drug responses associated with MED13L mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SSPNSSPVPSP
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q71F56
Mediator of RNA polymerase II transcription subunit 13-like
DEG_COP1_1
2049:2059
SSPNSSPVPSP
COP1
0.9384
More...