DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SSSLEVVPEA
Uniprot ID:
Q13823
Source protein:
Nucleolar GTP-binding protein 2
Source gene:
GNL2
Class:
DEG_COP1_1
Location:
476:485
E3 ligase:
COP1
DEGRON score:
0.825
ASA_SCORE:
67.13
COIL:
0.51
CONS_SCORE:
0.2396
DSS_SCORE:
0.5356
HELIX:
0.426
FCONS_SCORE:
0.9849
RIG_SCORE:
0.703
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E480K
TCGA-29-1784
OV
TCGA
SSSLEVVPEA
DEG_COP1_1
0.591
p.E480K
DO28561
OV
ICGC
SSSLEVVPEA
DEG_COP1_1
0.591
p.P490S
TCGA-DA-A960
SKCM
TCGA
SSSLEVVPEA
DEG_COP1_1
0.1944
p.P490S
DO219482
SKCM
ICGC
SSSLEVVPEA
DEG_COP1_1
0.1944
p.Q472E
TCGA-XF-A9T0
BLCA
TCGA
SSSLEVVPEA
DEG_COP1_1
0.2222
p.Q472E
DO51920
BLCA
ICGC
SSSLEVVPEA
DEG_COP1_1
0.2222
p.P475T
DO229019
LICA
ICGC
SSSLEVVPEA
DEG_COP1_1
0.3056
p.P490T
DO229019
LICA
ICGC
SSSLEVVPEA
DEG_COP1_1
0.1944
p.N488K
DO229028
LICA
ICGC
SSSLEVVPEA
DEG_COP1_1
0.25
p.V494I
SIDM01412
Oral Cavity Carcinoma
GDSC
SSSLEVVPEA
DEG_COP1_1
0.0833
p.V494I
ACH-000762
Head and Neck Cancer
CCLE
SSSLEVVPEA
DEG_COP1_1
0.0833
p.P490A
ACH-000283
Brain Cancer
CCLE
SSSLEVVPEA
DEG_COP1_1
0.1944
Drug responses associated with GNL2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SSSLEVVPEA
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q13823
Nucleolar GTP-binding protein 2
DEG_COP1_1
476:485
SSSLEVVPEA
COP1
0.825
More...