DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SVEPATVPSI
Uniprot ID:
Q9UHV7
Source protein:
Mediator of RNA polymerase II transcription subunit 13
Source gene:
MED13
Class:
DEG_COP1_1
Location:
1056:1065
E3 ligase:
COP1
DEGRON score:
0.9832
ASA_SCORE:
83.09
COIL:
0.9567
CONS_SCORE:
0.3608
DSS_SCORE:
0.3511
HELIX:
0.0162
FCONS_SCORE:
0.8572
RIG_SCORE:
0.7162
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A1068S
TCGA-BS-A0UF
UCEC
TCGA
SVEPATVPSI
DEG_COP1_1
0.25
p.A1068S
DO41488
UCEC
ICGC
SVEPATVPSI
DEG_COP1_1
0.25
p.P1059H
TCGA-CD-A4MG
STAD
TCGA
SVEPATVPSI
DEG_COP1_1
0.6583
p.P1059H
DO48009
STAD
ICGC
SVEPATVPSI
DEG_COP1_1
0.6583
p.C1051R
DO234417
ESAD
ICGC
SVEPATVPSI
DEG_COP1_1
0.1944
p.N1074K
DO233629
GACA
ICGC
SVEPATVPSI
DEG_COP1_1
0.0833
p.A1068E
DO229032
LICA
ICGC
SVEPATVPSI
DEG_COP1_1
0.25
p.H1069Q
SIDM00570
Gastric Carcinoma
GDSC
SVEPATVPSI
DEG_COP1_1
0.2222
p.H1069Q
ACH-000674
Gastric Cancer
CCLE
SVEPATVPSI
DEG_COP1_1
0.2222
p.P1063S
SIDM00853
Other Sarcomas
GDSC
SVEPATVPSI
DEG_COP1_1
0.6752
p.P1063S
ACH-000835
Sarcoma
CCLE
SVEPATVPSI
DEG_COP1_1
0.6752
p.P1063S
GCT
soft_tissue
COSMIC
SVEPATVPSI
DEG_COP1_1
0.6752
Drug responses associated with MED13 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SVEPATVPSI
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9UHV7
Mediator of RNA polymerase II transcription subunit 13
DEG_COP1_1
1056:1065
SVEPATVPSI
COP1
0.9832
More...