DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
TRLCLHNLP
Uniprot ID:
Q9NW13
Source protein:
RNA-binding protein 28
Source gene:
RBM28
Class:
DEG_APCC_DBOX_1
Location:
487:495
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5021
ASA_SCORE:
28.7222
COIL:
0.3962
CONS_SCORE:
0.6954
DSS_SCORE:
0.1737
HELIX:
0.0227
FCONS_SCORE:
1.3581
RIG_SCORE:
0.8337
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K501R
TCGA-94-A5I4
LUSC
TCGA
TRLCLHNLP
DEG_APCC_DBOX_1
0.2778
p.K501R
DO219175
LUSC
ICGC
TRLCLHNLP
DEG_APCC_DBOX_1
0.2778
p.K496R
TCGA-CA-6718
COAD
TCGA
TRLCLHNLP
DEG_APCC_DBOX_1
0.3056
p.K496R
DO7801
COAD
ICGC
TRLCLHNLP
DEG_APCC_DBOX_1
0.3056
p.A497G
DO231031
LUSC
ICGC
TRLCLHNLP
DEG_APCC_DBOX_1
0.2778
p.D479E
DO49451
PACA
ICGC
TRLCLHNLP
DEG_APCC_DBOX_1
0.1111
p.R486Q
SIDM00325
Esophageal Squamous Cell Carcinoma
GDSC
TRLCLHNLP
DEG_APCC_DBOX_1
0.3056
p.R486Q
TE-9
oesophagus
COSMIC
TRLCLHNLP
DEG_APCC_DBOX_1
0.3056
p.K492R
SK-UT-1
soft_tissue
COSMIC
TRLCLHNLP
DEG_APCC_DBOX_1
0.7237
p.A501V
23132-87
stomach
COSMIC
TRLCLHNLP
DEG_APCC_DBOX_1
0.2778
Drug responses associated with RBM28 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of TRLCLHNLP
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NW13
RNA-binding protein 28
DEG_APCC_DBOX_1
487:495
TRLCLHNLP
APC,CDC20,FZR1
0.5021
More...