DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
TRSPLSVVK
Uniprot ID:
O94953
Source protein:
Lysine-specific demethylase 4B
Source gene:
KDM4B
Class:
DEG_APCC_DBOX_1
Location:
620:628
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9397
ASA_SCORE:
88
COIL:
0.7272
CONS_SCORE:
0.2972
DSS_SCORE:
0.7193
HELIX:
0.0308
FCONS_SCORE:
0.9923
RIG_SCORE:
0.6395
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L624M
TCGA-13-0887
OV
TCGA
TRSPLSVVK
DEG_APCC_DBOX_1
0.711
p.L624M
DO31969
OV
ICGC
TRSPLSVVK
DEG_APCC_DBOX_1
0.711
p.E635K
TCGA-A6-5665
COAD
TCGA
TRSPLSVVK
DEG_APCC_DBOX_1
0.1389
p.E635K
DO9756
COAD
ICGC
TRSPLSVVK
DEG_APCC_DBOX_1
0.1389
p.R611Q
TCGA-A6-6781
COAD
TCGA
TRSPLSVVK
DEG_APCC_DBOX_1
0.0833
p.R612H
TCGA-AP-A1DK
UCEC
TCGA
TRSPLSVVK
DEG_APCC_DBOX_1
0.1111
p.R612H
DO233254
GACA
ICGC
TRSPLSVVK
DEG_APCC_DBOX_1
0.1111
p.R612H
DO42033
UCEC
ICGC
TRSPLSVVK
DEG_APCC_DBOX_1
0.1111
p.P623T
TCGA-BH-A0BP
BRCA
TCGA
TRSPLSVVK
DEG_APCC_DBOX_1
0.5919
p.P623T
DO4056
BRCA
ICGC
TRSPLSVVK
DEG_APCC_DBOX_1
0.5919
p.R621Q
TCGA-BR-7707
STAD
TCGA
TRSPLSVVK
DEG_APCC_DBOX_1
0.7329
p.R621Q
DO38487
STAD
ICGC
TRSPLSVVK
DEG_APCC_DBOX_1
0.7329
p.S622P
TCGA-DD-AACD
LIHC
TCGA
TRSPLSVVK
DEG_APCC_DBOX_1
0.6752
p.S622P
DO52199
LIHC
ICGC
TRSPLSVVK
DEG_APCC_DBOX_1
0.6752
p.K628N
DO229025
LICA
ICGC
TRSPLSVVK
DEG_APCC_DBOX_1
0.5806
p.R617L
DO231120
LUSC
ICGC
TRSPLSVVK
DEG_APCC_DBOX_1
0.25
p.P614L
SIDM00545
Melanoma
GDSC
TRSPLSVVK
DEG_APCC_DBOX_1
0.1667
p.P614L
ACH-000987
Skin Cancer
CCLE
TRSPLSVVK
DEG_APCC_DBOX_1
0.1667
p.P614L
Mewo
skin
COSMIC
TRSPLSVVK
DEG_APCC_DBOX_1
0.1667
p.G615E
LNCaP-Clone-FGC
prostate
COSMIC
TRSPLSVVK
DEG_APCC_DBOX_1
0.1944
p.P631L
LoVo
large_intestine
COSMIC
TRSPLSVVK
DEG_APCC_DBOX_1
0.25
Drug responses associated with KDM4B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of TRSPLSVVK
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O94953
Lysine-specific demethylase 4B
DEG_APCC_DBOX_1
620:628
TRSPLSVVK
APC,CDC20,FZR1
0.9397
More...