DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
TSSQHLVPSP
Uniprot ID:
Q8IYG6
Source protein:
Leucine-rich repeat-containing protein 56
Source gene:
LRRC56
Class:
DEG_COP1_1
Location:
443:452
E3 ligase:
COP1
DEGRON score:
0.9136
ASA_SCORE:
87.38
COIL:
0.8894
CONS_SCORE:
0.3175
DSS_SCORE:
0.853
HELIX:
0.0768
FCONS_SCORE:
1.0091
RIG_SCORE:
0.4951
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S441F
TCGA-XF-A9SX
BLCA
TCGA
TSSQHLVPSP
DEG_COP1_1
0.2778
p.S441F
DO51916
BLCA
ICGC
TSSQHLVPSP
DEG_COP1_1
0.2778
p.GT442GP
DO222558
COCA
ICGC
TSSQHLVPSP
DEG_COP1_1
0
p.S445R
DO232829
NACA
ICGC
TSSQHLVPSP
DEG_COP1_1
0.7427
p.G442R
SIDM01110
Hepatocellular Carcinoma
GDSC
TSSQHLVPSP
DEG_COP1_1
0.3056
p.R459P
SIDM00983
Bladder Carcinoma
GDSC
TSSQHLVPSP
DEG_COP1_1
0.1389
p.R459P
ACH-000896
Bladder Cancer
CCLE
TSSQHLVPSP
DEG_COP1_1
0.1389
p.R459P
647-V
urinary_tract
COSMIC
TSSQHLVPSP
DEG_COP1_1
0.1389
Drug responses associated with LRRC56 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of TSSQHLVPSP
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8IYG6
Leucine-rich repeat-containing protein 56
DEG_COP1_1
443:452
TSSQHLVPSP
COP1
0.9136
More...