DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
TSSVVPEA
Uniprot ID:
O15018
Source protein:
PDZ domain-containing protein 2
Source gene:
PDZD2
Class:
DEG_COP1_1
Location:
2254:2261
E3 ligase:
COP1
DEGRON score:
0.9616
ASA_SCORE:
85.9
COIL:
0.8785
CONS_SCORE:
0.3181
DSS_SCORE:
0.5848
HELIX:
0.068
FCONS_SCORE:
0.924
RIG_SCORE:
0.7116
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E2260K
TCGA-D3-A8GV
SKCM
TCGA
TSSVVPEA
DEG_COP1_1
0.7022
p.E2260K
DO219477
SKCM
ICGC
TSSVVPEA
DEG_COP1_1
0.7022
p.R2247Q
DO228483
BRCA
ICGC
TSSVVPEA
DEG_COP1_1
0.1389
p.R2247Q
DO229003
COCA
ICGC
TSSVVPEA
DEG_COP1_1
0.1389
p.R2247Q
DO229005
COCA
ICGC
TSSVVPEA
DEG_COP1_1
0.1389
p.R2247Q
DO230525
LUSC
ICGC
TSSVVPEA
DEG_COP1_1
0.1389
p.R2247Q
DO230554
LUSC
ICGC
TSSVVPEA
DEG_COP1_1
0.1389
p.V2258F
DO228948
LICA
ICGC
TSSVVPEA
DEG_COP1_1
0.7068
p.A2263S
DO229029
LICA
ICGC
TSSVVPEA
DEG_COP1_1
0.2778
p.R2245C
DO229062
LICA
ICGC
TSSVVPEA
DEG_COP1_1
0.0833
p.G2244V
SIDM00124
Kidney Carcinoma
GDSC
TSSVVPEA
DEG_COP1_1
0.0556
p.G2244V
ACH-000555
Kidney Cancer
CCLE
TSSVVPEA
DEG_COP1_1
0.0556
p.G2244V
A498
kidney
COSMIC
TSSVVPEA
DEG_COP1_1
0.0556
p.R2245H
ACH-001441
Eye Cancer
CCLE
TSSVVPEA
DEG_COP1_1
0.0833
p.R2245H
ACH-001559
Lung Cancer
CCLE
TSSVVPEA
DEG_COP1_1
0.0833
Drug responses associated with PDZD2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of TSSVVPEA
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15018
PDZ domain-containing protein 2
DEG_COP1_1
2254:2261
TSSVVPEA
COP1
0.9616
More...