DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
TTDSTPKK
Uniprot ID:
O75113
Source protein:
NEDD4-binding protein 1
Source gene:
N4BP1
Class:
DEG_SCF_SKP2-CKS1_1
Location:
422:429
E3 ligase:
SKP2,CSK1
DEGRON score:
0.9197
ASA_SCORE:
97.7875
COIL:
0.8201
CONS_SCORE:
0.3366
DSS_SCORE:
0.6112
HELIX:
0.1546
FCONS_SCORE:
1.1566
RIG_SCORE:
0.6925
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T430A
TCGA-AX-A06F
UCEC
TCGA
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.3056
p.T430A
DO41752
UCEC
ICGC
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.3056
p.H433Y
TCGA-CK-4951
COAD
TCGA
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.2222
p.H433Y
DO10582
COAD
ICGC
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.2222
p.D424N
TCGA-JW-A5VL
CESC
TCGA
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.6932
p.D424N
DO49976
CESC
ICGC
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.6932
p.V439L
DO225280
BRCA
ICGC
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.0556
p.T426N
DO229032
LICA
ICGC
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.8166
p.T430K
DO229037
LICA
ICGC
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.3056
p.Q435K
DO229045
LICA
ICGC
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.1667
p.Q431R
SIDM00683
Prostate Carcinoma
GDSC
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.2778
p.Q431R
ACH-000977
lymph_node
CCLE
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.2778
p.Q431R
LNCaP-Clone-FGC
prostate
COSMIC
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.2778
p.N419D
SIDM00214
Colorectal Carcinoma
GDSC
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.25
p.N419D
ACH-000955
Colon/Colorectal Cancer
CCLE
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.25
p.N419D
SNU-407
large_intestine
COSMIC
TTDSTPKK
DEG_SCF_SKP2-CKS1_1
0.25
Drug responses associated with N4BP1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of TTDSTPKK
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75113
NEDD4-binding protein 1
DEG_SCF_SKP2-CKS1_1
422:429
TTDSTPKK
SKP2,CSK1
0.9197
More...